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The map label for this gene is ydeA [H]

Identifier: 28379549

GI number: 28379549

Start: 2812436

End: 2813023

Strand: Direct

Name: ydeA [H]

Synonym: lp_3142

Alternate gene names: 28379549

Gene position: 2812436-2813023 (Clockwise)

Preceding gene: 28379547

Following gene: 28379550

Centisome position: 85.01

GC content: 38.78

Gene sequence:

>588_bases
ATGAAAACTGCATTATTTCTAATGCTAGATCAATATGCAGATTGGGAAGCTTCTTATCTAGCTAGTCAATTAAATCAAAG
CACTGACTGGCAAGTTAAAACGACTTCAACAACACCATTGGTTACGTCAATTGGTGGCTTCACCACTAAAGTTGACTATC
AACTGGATTGTTTACCAACTATTGACTTATTAATCCTAATTGGTGGTAACTCTTGGAATATCAATAATTCATTATTATAT
TCACTAGTTCAGCAACACCTCAATGCCTCAAAACCAGTTGGCGCAATCTGTGGTGCGGTAGATTACTTAGCCCAAAACGG
TTTTTTAACTGGTTATCAGCATACCGGCAATTCACTGGCGATGTGGCACAATTATCCTAACTATCAAAACTCAGCCGACT
TTCATGAACAGCAAGTCATTAGCGACAAGAATCTAGTCACAGCTAACGGCACAGCGGCACTGGCATTTACTGCCGCCGTT
TTACAACTAATTCATTTTCAATCTAGTGAAGAACTAACCCGAACTATCGATCTATACCGCTTAGAATTTTACCAATACTG
TCAAAAATATGGTAATCCGTTCGGCTAA

Upstream 100 bases:

>100_bases
CTCCAACATTTAATCATGCACTTGCTTTTTAGAACGTACGTTCCTATAATTAAGGATAACATATTCGGTTCTGAAAATAT
ATTTTCCTCTGGAGGTCAAC

Downstream 100 bases:

>100_bases
GTTTTTCCAAAAACTAATCTTGTCAGTTAAAACAACGTCAACACTCGCGCCAAATTCTGCCGCATAATGCAGACACCTTC
TTGGATAGATAAATCATGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKTALFLMLDQYADWEASYLASQLNQSTDWQVKTTSTTPLVTSIGGFTTKVDYQLDCLPTIDLLILIGGNSWNINNSLLY
SLVQQHLNASKPVGAICGAVDYLAQNGFLTGYQHTGNSLAMWHNYPNYQNSADFHEQQVISDKNLVTANGTAALAFTAAV
LQLIHFQSSEELTRTIDLYRLEFYQYCQKYGNPFG

Sequences:

>Translated_195_residues
MKTALFLMLDQYADWEASYLASQLNQSTDWQVKTTSTTPLVTSIGGFTTKVDYQLDCLPTIDLLILIGGNSWNINNSLLY
SLVQQHLNASKPVGAICGAVDYLAQNGFLTGYQHTGNSLAMWHNYPNYQNSADFHEQQVISDKNLVTANGTAALAFTAAV
LQLIHFQSSEELTRTIDLYRLEFYQYCQKYGNPFG
>Mature_195_residues
MKTALFLMLDQYADWEASYLASQLNQSTDWQVKTTSTTPLVTSIGGFTTKVDYQLDCLPTIDLLILIGGNSWNINNSLLY
SLVQQHLNASKPVGAICGAVDYLAQNGFLTGYQHTGNSLAMWHNYPNYQNSADFHEQQVISDKNLVTANGTAALAFTAAV
LQLIHFQSSEELTRTIDLYRLEFYQYCQKYGNPFG

Specific function: Unknown

COG id: COG0693

COG function: function code R; Putative intracellular protease/amidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PfpI endopeptidase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 21798; Mature: 21798

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALFLMLDQYADWEASYLASQLNQSTDWQVKTTSTTPLVTSIGGFTTKVDYQLDCLPT
CCCEEEEEEHHCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCEEEEECEEEECCCC
IDLLILIGGNSWNINNSLLYSLVQQHLNASKPVGAICGAVDYLAQNGFLTGYQHTGNSLA
EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECEEECCCEEE
MWHNYPNYQNSADFHEQQVISDKNLVTANGTAALAFTAAVLQLIHFQSSEELTRTIDLYR
EEECCCCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LEFYQYCQKYGNPFG
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MKTALFLMLDQYADWEASYLASQLNQSTDWQVKTTSTTPLVTSIGGFTTKVDYQLDCLPT
CCCEEEEEEHHCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHCCCEEEEECEEEECCCC
IDLLILIGGNSWNINNSLLYSLVQQHLNASKPVGAICGAVDYLAQNGFLTGYQHTGNSLA
EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECEEECCCEEE
MWHNYPNYQNSADFHEQQVISDKNLVTANGTAALAFTAAVLQLIHFQSSEELTRTIDLYR
EEECCCCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LEFYQYCQKYGNPFG
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]