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The map label for this gene is ycdT [C]

Identifier: 28379449

GI number: 28379449

Start: 2687548

End: 2688684

Strand: Direct

Name: ycdT [C]

Synonym: lp_3021

Alternate gene names: 28379449

Gene position: 2687548-2688684 (Clockwise)

Preceding gene: 28379448

Following gene: 28379453

Centisome position: 81.24

GC content: 44.5

Gene sequence:

>1137_bases
ATGACTTGGTCACATTGGGAGATAACTCCATTTATTACAAGTGTTTTTTTCATCCTAGGCGTGCTGACCCTTTTTTGGGT
ATCACAAAATTGGATTATCAACTTCTTCAATACTCATCATTGGCGGGTTGACCAATCGCTTATTACCGACTGGTACGGCT
TAATCTACATGATGTTATTTGTCTTTGGGATGCAAACTGCCGTTGTGGGCCAGAACGACGCCTGGATTTTCATGAATTTC
CAGCTCATCGGGCTAACTTTTTGTGGCTACTTTCTCAATGTACGTGTCCGCTATTACTACTTGTACCCGCTTGTCTTTAT
CTTTATGGGCTTCAATCACTCCTTGTATTACTGGGAGTCGTGGGGGCACGCCGTCACACTGATCCTCTTCTTTACGGCGC
TCGGCCGATTGCGTAAACACGTCCCACTCCAAACGAAACAGGGACAAGTCACACTTTATTTAGTCACTTGTGCTGGTTTT
GGGGCCGTTCTCTGGTGGTTCATGAAGCTTAAGTTCAACTTATCATGGGCAACTTATTGGCAAGAATGGACCTACCTACT
CGTCTTTGCTTCCTTGCTCTATATCTACGCCAGCATGTTGTCAGCCAATGCACACCTCAAACAGAATCTGGTCGCATTCG
CTAATCACGACGCTCTGACCAAAATCGAAAATTTTGCAGCTTACAAAACAGCCATTAATTATCAGGTTACAAGCAGTCGG
AAAAACGGCTCACAATTGACCATGCTGATGTTTGACATCGACCACTTCAAACAAGTCAACGACACTTATGGTCACTTGGC
TGGCGACAAAATTCTTCAGCACGTCGCCCAAGTAGCTACGATTGTCTTTCATGCTAATAATCCGCAAATCTCACTATATC
GAACCGGTGGCGAGGAATTTAACGTTATCTTCCCCAACTATGATTTAACCGAAGCACTTGCGGTCGCTGAACAACTATTT
GCGGCCATCAATCATATCGCTGTACCAGTTAATGATCATCAAATCCAACTGTCGATCTCGATTGGCCTATCAGAATTAGC
AGCTGATGACCAATCACCAACGGCCTTTTATCAGCGCGTCGACGCCAATCTATATCATTCTAAAAAGCACGGACGAATGC
AAATCACCGCGAAATAA

Upstream 100 bases:

>100_bases
CATAATCACAGTCGCTATTTAGCAGTTAAAGGGATATACTTATACCGGCGTCATTTAATTCGAACCAACGCAGTTTTTGC
GATTTGAAAGGTGTTTGCGT

Downstream 100 bases:

>100_bases
AATAATCATTAATCTTAAAAGGACGGTTCTAACGACTAATTTTAGTCATTGGAACCGTCCTTAATTAAGATTAATTCGCT
ACAGAAACGCTACGGATATT

Product: diguanylate cyclase/phosphodiesterase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MTWSHWEITPFITSVFFILGVLTLFWVSQNWIINFFNTHHWRVDQSLITDWYGLIYMMLFVFGMQTAVVGQNDAWIFMNF
QLIGLTFCGYFLNVRVRYYYLYPLVFIFMGFNHSLYYWESWGHAVTLILFFTALGRLRKHVPLQTKQGQVTLYLVTCAGF
GAVLWWFMKLKFNLSWATYWQEWTYLLVFASLLYIYASMLSANAHLKQNLVAFANHDALTKIENFAAYKTAINYQVTSSR
KNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVAQVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLF
AAINHIAVPVNDHQIQLSISIGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITAK

Sequences:

>Translated_378_residues
MTWSHWEITPFITSVFFILGVLTLFWVSQNWIINFFNTHHWRVDQSLITDWYGLIYMMLFVFGMQTAVVGQNDAWIFMNF
QLIGLTFCGYFLNVRVRYYYLYPLVFIFMGFNHSLYYWESWGHAVTLILFFTALGRLRKHVPLQTKQGQVTLYLVTCAGF
GAVLWWFMKLKFNLSWATYWQEWTYLLVFASLLYIYASMLSANAHLKQNLVAFANHDALTKIENFAAYKTAINYQVTSSR
KNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVAQVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLF
AAINHIAVPVNDHQIQLSISIGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITAK
>Mature_377_residues
TWSHWEITPFITSVFFILGVLTLFWVSQNWIINFFNTHHWRVDQSLITDWYGLIYMMLFVFGMQTAVVGQNDAWIFMNFQ
LIGLTFCGYFLNVRVRYYYLYPLVFIFMGFNHSLYYWESWGHAVTLILFFTALGRLRKHVPLQTKQGQVTLYLVTCAGFG
AVLWWFMKLKFNLSWATYWQEWTYLLVFASLLYIYASMLSANAHLKQNLVAFANHDALTKIENFAAYKTAINYQVTSSRK
NGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVAQVATIVFHANNPQISLYRTGGEEFNVIFPNYDLTEALAVAEQLFA
AINHIAVPVNDHQIQLSISIGLSELAADDQSPTAFYQRVDANLYHSKKHGRMQITAK

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=228, Percent_Identity=28.0701754385965, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=28.7234042553192, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87082007, Length=188, Percent_Identity=31.9148936170213, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787056, Length=131, Percent_Identity=36.6412213740458, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=31.5151515151515, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788381, Length=163, Percent_Identity=25.7668711656442, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=180, Percent_Identity=30.5555555555556, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=27.8688524590164, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=26.3736263736264, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=31.5789473684211, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=194, Percent_Identity=26.8041237113402, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 43849; Mature: 43718

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWSHWEITPFITSVFFILGVLTLFWVSQNWIINFFNTHHWRVDQSLITDWYGLIYMMLF
CCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHH
VFGMQTAVVGQNDAWIFMNFQLIGLTFCGYFLNVRVRYYYLYPLVFIFMGFNHSLYYWES
HHCCHHEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCEEEEEC
WGHAVTLILFFTALGRLRKHVPLQTKQGQVTLYLVTCAGFGAVLWWFMKLKFNLSWATYW
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCHHHHH
QEWTYLLVFASLLYIYASMLSANAHLKQNLVAFANHDALTKIENFAAYKTAINYQVTSSR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEEECCC
KNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVAQVATIVFHANNPQISLYRTGGEEF
CCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCEE
NVIFPNYDLTEALAVAEQLFAAINHIAVPVNDHQIQLSISIGLSELAADDQSPTAFYQRV
EEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEEECHHHHCCCCCCCHHHHHHH
DANLYHSKKHGRMQITAK
CCHHHCCCCCCEEEEEEC
>Mature Secondary Structure 
TWSHWEITPFITSVFFILGVLTLFWVSQNWIINFFNTHHWRVDQSLITDWYGLIYMMLF
CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHH
VFGMQTAVVGQNDAWIFMNFQLIGLTFCGYFLNVRVRYYYLYPLVFIFMGFNHSLYYWES
HHCCHHEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCEEEEEC
WGHAVTLILFFTALGRLRKHVPLQTKQGQVTLYLVTCAGFGAVLWWFMKLKFNLSWATYW
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCHHHHH
QEWTYLLVFASLLYIYASMLSANAHLKQNLVAFANHDALTKIENFAAYKTAINYQVTSSR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEEECCC
KNGSQLTMLMFDIDHFKQVNDTYGHLAGDKILQHVAQVATIVFHANNPQISLYRTGGEEF
CCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCCEE
NVIFPNYDLTEALAVAEQLFAAINHIAVPVNDHQIQLSISIGLSELAADDQSPTAFYQRV
EEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEEECHHHHCCCCCCCHHHHHHH
DANLYHSKKHGRMQITAK
CCHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA