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The map label for this gene is yydK [H]

Identifier: 28379267

GI number: 28379267

Start: 2473089

End: 2473796

Strand: Direct

Name: yydK [H]

Synonym: lp_2782

Alternate gene names: 28379267

Gene position: 2473089-2473796 (Clockwise)

Preceding gene: 28379258

Following gene: 28379268

Centisome position: 74.75

GC content: 45.2

Gene sequence:

>708_bases
ATGTATCGTGACATTGCAACCAAACTCGTTGCCGCCATTCAAGACGGCATTTTTACCGTCAAACTCCCCACGGAAGCCCA
GTTAATGGAACGTTACCAAGCCAGCCGCAACACCATTCGCAAAGCGATTGACTTGGTGTACCAGCAGGGGCTCCTGCGTC
GGGTTCAAGGCAGTGGCTATTATATTACTAATATTCAGCTTCAACATAAAACGGTAGTGAATCTGTCAGCACGCTCACTC
TTCAATAGTCATGTCCACCCACGGACTTTAACTTCCAAGATTCTGACTTTTGATACGATCCACGGCGATAGTGCCCTGAG
CCGCAAACTCAACATTCCCGTCGACGAAGAACTGTATCGTATCATTCGCCTCCGCTACTGGCACGACCAACTGTATTGTT
TGGAAAAGGCCTACTACTTACGCTCTGTCGTCCCCTATCTATCGACCGAAGCTGTCAATACGTCAATTTGGGACTTCATC
AACGAAGCTTACGGCATCGGGATTGCTAACAGTGATGATTATCTTTCACTCACCAATCTTAACAAGGAAGAGGCCGAACT
AATGAATTTGGCACAGGGCGCAACTCACTTGGCCTTGGATTCTTGTAACTATTATAAGAATAATGGCTTACTAGATTTTT
CTCACACCATCTTTGTTTATCCCGACCTCGCATTGTATTTTCATACGACAAATCTTGCAAATAATTAA

Upstream 100 bases:

>100_bases
ACAAATTTGACAAGCCTTATTAATCAGATATCTGCAATTTATTTGATTTGTACCCACAAATTATTAAATAACAACTTAAT
ATTCGAAAGAAGTGAACACC

Downstream 100 bases:

>100_bases
TTTATGGCTAAAAAAAGACGATTCACTATAATTTCATCACAATTTATGGGTATACTAGTAACAGTATCCAAATTTACGAT
GGAGGAATTAGCGTGTCAGC

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MYRDIATKLVAAIQDGIFTVKLPTEAQLMERYQASRNTIRKAIDLVYQQGLLRRVQGSGYYITNIQLQHKTVVNLSARSL
FNSHVHPRTLTSKILTFDTIHGDSALSRKLNIPVDEELYRIIRLRYWHDQLYCLEKAYYLRSVVPYLSTEAVNTSIWDFI
NEAYGIGIANSDDYLSLTNLNKEEAELMNLAQGATHLALDSCNYYKNNGLLDFSHTIFVYPDLALYFHTTNLANN

Sequences:

>Translated_235_residues
MYRDIATKLVAAIQDGIFTVKLPTEAQLMERYQASRNTIRKAIDLVYQQGLLRRVQGSGYYITNIQLQHKTVVNLSARSL
FNSHVHPRTLTSKILTFDTIHGDSALSRKLNIPVDEELYRIIRLRYWHDQLYCLEKAYYLRSVVPYLSTEAVNTSIWDFI
NEAYGIGIANSDDYLSLTNLNKEEAELMNLAQGATHLALDSCNYYKNNGLLDFSHTIFVYPDLALYFHTTNLANN
>Mature_235_residues
MYRDIATKLVAAIQDGIFTVKLPTEAQLMERYQASRNTIRKAIDLVYQQGLLRRVQGSGYYITNIQLQHKTVVNLSARSL
FNSHVHPRTLTSKILTFDTIHGDSALSRKLNIPVDEELYRIIRLRYWHDQLYCLEKAYYLRSVVPYLSTEAVNTSIWDFI
NEAYGIGIANSDDYLSLTNLNKEEAELMNLAQGATHLALDSCNYYKNNGLLDFSHTIFVYPDLALYFHTTNLANN

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=216, Percent_Identity=28.2407407407407, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786950, Length=222, Percent_Identity=25.6756756756757, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27009; Mature: 27009

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRDIATKLVAAIQDGIFTVKLPTEAQLMERYQASRNTIRKAIDLVYQQGLLRRVQGSGY
CCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
YITNIQLQHKTVVNLSARSLFNSHVHPRTLTSKILTFDTIHGDSALSRKLNIPVDEELYR
EEEEEEEECCEEEHHHHHHHHHCCCCCHHHHHHHHEEEEECCCHHHHHCCCCCCHHHHHH
IIRLRYWHDQLYCLEKAYYLRSVVPYLSTEAVNTSIWDFINEAYGIGIANSDDYLSLTNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECC
NKEEAELMNLAQGATHLALDSCNYYKNNGLLDFSHTIFVYPDLALYFHTTNLANN
CHHHHHHHHHHCCCHHEEECCCCEECCCCEEEECCEEEEEECEEEEEEECCCCCC
>Mature Secondary Structure
MYRDIATKLVAAIQDGIFTVKLPTEAQLMERYQASRNTIRKAIDLVYQQGLLRRVQGSGY
CCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
YITNIQLQHKTVVNLSARSLFNSHVHPRTLTSKILTFDTIHGDSALSRKLNIPVDEELYR
EEEEEEEECCEEEHHHHHHHHHCCCCCHHHHHHHHEEEEECCCHHHHHCCCCCCHHHHHH
IIRLRYWHDQLYCLEKAYYLRSVVPYLSTEAVNTSIWDFINEAYGIGIANSDDYLSLTNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEEECC
NKEEAELMNLAQGATHLALDSCNYYKNNGLLDFSHTIFVYPDLALYFHTTNLANN
CHHHHHHHHHHCCCHHEEECCCCEECCCCEEEECCEEEEEECEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]