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The map label for this gene is ypsC [H]

Identifier: 28378435

GI number: 28378435

Start: 1594001

End: 1595146

Strand: Direct

Name: ypsC [H]

Synonym: lp_1756

Alternate gene names: 28378435

Gene position: 1594001-1595146 (Clockwise)

Preceding gene: 28378434

Following gene: 28378436

Centisome position: 48.18

GC content: 46.86

Gene sequence:

>1146_bases
ATGCAAGAATTTAGATTAATTGCCACCGCCGCTAGCGGAATTGAAGCATTAGTGGGGCGTGAATTACGAGATTTAGGGTA
TCAAGTTCAAACTGAAAATGGCCGGGTTCGATTTAACGGAACGATCAAAGATATTTTGCGGACCAACTTGTGGTTACGAA
CGGCTGATCGAATCAAGATCATCGTTGGTGAATTTGATGCTTATACGTTCGATGAGTTGTTTGAAAAGACTCTCGCATTG
CCATGGGACCAGTTATTGCCGATGGACGCTGAATTTCCAGTTGAAGGTAAATCGCGCAACTCTAAACTCCACAGTGTTCC
CGACGTGCAGTCTATCGTCAAAAAGGCGATCGTTAATCAGTTAGCCGATACTTATCATCGGAGCGGGCACCTTCCGGAGA
CAGGCGCTTTGTTCCCATTAGAAGTGGCTATTAATAAGGATCACGTGTTGTTAACGCTGGATACAACTGGCTCTAGTTTA
TTCAAACGGGGTTACCGAGTCGAAAAGGGGGGCGCACCCTTAAAAGAAAACATGGCCGCTGCCTTAGTGATGTTAGCTAA
GTGGTATCCGGATAATCCATTTGTTGATCCAGTTTGTGGTTCGGGGACGATTCCAATCGAAGCCGCTTTACTGGCGCGCA
ACATTGCCCCGGGGTTCAACCGCGCATTTGCGTGCGAAAAGTGGGACTGGGTTCCCGCTGGCCTGAGTCAACAATTGAGA
GACGAAGCTGATAGTTTAGCCGATTACGACACTGAGCTGGATATTAGTGGGTACGATATTGACGGTAAAATGATTGATAT
CGCCAAGTTGAATGCGCGGGAAGCCGGGTTGTTGCATGACATTCATTTCAAACAACTGGCCGTCAAAGACTTTACGACTG
ACAAGATCAACGGGGTCCTAATTGCGAACCCACCATATGGGGAGCGGCTAAGCGATCGGGATAGTGTCCGGATTCTCTAT
CGGCAAATGGGCCAAGTTTACAGTAAATTGCCAAGTTGGAGCAAGTATATCTTGACCAGTGACTTAGAATTTGAAGACTT
CTATGGACAAAAAGCCACGAAACGCCGGAAACTCTATAACGGTGCGTTACGGACAGATTATTTCCAATATTGGGGTAAAC
GAATTCGGCCAGCACGGACGGAATAA

Upstream 100 bases:

>100_bases
CAAACTAGCAACTTATGCTAAACTAGGTGAGGAAACCAATTTAGTGGAAATATTTACTCAACAAGATGCGCCTACAGAAC
AGGCGTCGCAGGAGGAAACT

Downstream 100 bases:

>100_bases
GCAAGCGACCTTTGTTGGTAAAAGTAGGTGAAAAATATTGGCAAATGAAATACCGCGGTCTGAAGTTGATTCCCAGCAGC
TATTAGTATTTAAAGTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MQEFRLIATAASGIEALVGRELRDLGYQVQTENGRVRFNGTIKDILRTNLWLRTADRIKIIVGEFDAYTFDELFEKTLAL
PWDQLLPMDAEFPVEGKSRNSKLHSVPDVQSIVKKAIVNQLADTYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSL
FKRGYRVEKGGAPLKENMAAALVMLAKWYPDNPFVDPVCGSGTIPIEAALLARNIAPGFNRAFACEKWDWVPAGLSQQLR
DEADSLADYDTELDISGYDIDGKMIDIAKLNAREAGLLHDIHFKQLAVKDFTTDKINGVLIANPPYGERLSDRDSVRILY
RQMGQVYSKLPSWSKYILTSDLEFEDFYGQKATKRRKLYNGALRTDYFQYWGKRIRPARTE

Sequences:

>Translated_381_residues
MQEFRLIATAASGIEALVGRELRDLGYQVQTENGRVRFNGTIKDILRTNLWLRTADRIKIIVGEFDAYTFDELFEKTLAL
PWDQLLPMDAEFPVEGKSRNSKLHSVPDVQSIVKKAIVNQLADTYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSL
FKRGYRVEKGGAPLKENMAAALVMLAKWYPDNPFVDPVCGSGTIPIEAALLARNIAPGFNRAFACEKWDWVPAGLSQQLR
DEADSLADYDTELDISGYDIDGKMIDIAKLNAREAGLLHDIHFKQLAVKDFTTDKINGVLIANPPYGERLSDRDSVRILY
RQMGQVYSKLPSWSKYILTSDLEFEDFYGQKATKRRKLYNGALRTDYFQYWGKRIRPARTE
>Mature_381_residues
MQEFRLIATAASGIEALVGRELRDLGYQVQTENGRVRFNGTIKDILRTNLWLRTADRIKIIVGEFDAYTFDELFEKTLAL
PWDQLLPMDAEFPVEGKSRNSKLHSVPDVQSIVKKAIVNQLADTYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSL
FKRGYRVEKGGAPLKENMAAALVMLAKWYPDNPFVDPVCGSGTIPIEAALLARNIAPGFNRAFACEKWDWVPAGLSQQLR
DEADSLADYDTELDISGYDIDGKMIDIAKLNAREAGLLHDIHFKQLAVKDFTTDKINGVLIANPPYGERLSDRDSVRILY
RQMGQVYSKLPSWSKYILTSDLEFEDFYGQKATKRRKLYNGALRTDYFQYWGKRIRPARTE

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=346, Percent_Identity=30.0578034682081, Blast_Score=154, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43113; Mature: 43113

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS00422 GRANINS_1 ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEFRLIATAASGIEALVGRELRDLGYQVQTENGRVRFNGTIKDILRTNLWLRTADRIKI
CCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHHHHHHHHHHEEECCEEEE
IVGEFDAYTFDELFEKTLALPWDQLLPMDAEFPVEGKSRNSKLHSVPDVQSIVKKAIVNQ
EEECCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LADTYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSLFKRGYRVEKGGAPLKENMAA
HHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEECCCHHHHHCCCEECCCCCCHHHHHHH
ALVMLAKWYPDNPFVDPVCGSGTIPIEAALLARNIAPGFNRAFACEKWDWVPAGLSQQLR
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHH
DEADSLADYDTELDISGYDIDGKMIDIAKLNAREAGLLHDIHFKQLAVKDFTTDKINGVL
HHHHHHHCCCCEECCCCEECCCCEEEEEECCCCCCCCEEHHHHHHHHHHCCCCCCCCEEE
IANPPYGERLSDRDSVRILYRQMGQVYSKLPSWSKYILTSDLEFEDFYGQKATKRRKLYN
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCHHHHHHHHHC
GALRTDYFQYWGKRIRPARTE
CCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQEFRLIATAASGIEALVGRELRDLGYQVQTENGRVRFNGTIKDILRTNLWLRTADRIKI
CCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHHHHHHHHHHEEECCEEEE
IVGEFDAYTFDELFEKTLALPWDQLLPMDAEFPVEGKSRNSKLHSVPDVQSIVKKAIVNQ
EEECCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LADTYHRSGHLPETGALFPLEVAINKDHVLLTLDTTGSSLFKRGYRVEKGGAPLKENMAA
HHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEECCCHHHHHCCCEECCCCCCHHHHHHH
ALVMLAKWYPDNPFVDPVCGSGTIPIEAALLARNIAPGFNRAFACEKWDWVPAGLSQQLR
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHH
DEADSLADYDTELDISGYDIDGKMIDIAKLNAREAGLLHDIHFKQLAVKDFTTDKINGVL
HHHHHHHCCCCEECCCCEECCCCEEEEEECCCCCCCCEEHHHHHHHHHHCCCCCCCCEEE
IANPPYGERLSDRDSVRILYRQMGQVYSKLPSWSKYILTSDLEFEDFYGQKATKRRKLYN
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHCCHHHHHHHHHC
GALRTDYFQYWGKRIRPARTE
CCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]