BacMap

Definition	Lactobacillus plantarum WCFS1, complete genome.
Accession	NC_004567
Length	3,308,274

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The map label for this gene is vdlC [H]

Identifier: 28378358

GI number: 28378358

Start: 1520460

End: 1521272

Strand: Direct

Name: vdlC [H]

Synonym: lp_1668

Alternate gene names: 28378358

Gene position: 1520460-1521272 (Clockwise)

Preceding gene: 28378357

Following gene: 28378359

Centisome position: 45.96

GC content: 46.62

Gene sequence:

>813_bases
ATGGCAGTTATTTTAATTACGGGTGCAAGCAGCGGTATTGGGTTTCAGACAGCGAAAGACTTAGCACAGCAAGGTCACGT
TGTTTACGGTGCGGCGCGGCGGTTGAATAAACTTGAAGCACTAGCCCCATACGGCGTTAAGCCCTTGTCACTAGATATAA
CCAATGAGCAGTCGCTTAGTCAGGCCGTAGCAACTTTAATTGCCAGTGAAGGACGCATTGATGTTTTGATCAACAATGCG
GGGTATGGCTCATATGGCGCTGTGGAGGATGTTTCCATTGATGAAGCCAGGCAACAGTTCGAGGTTAATTTATTTGGGAT
GGCTCGGCTGACACAATTAGTTTTACCGTATATGCGCGCGCAACGTGAAGGACGCATTATCAATACCTCTTCCATGGGTG
GACGGTTGGTGAGTTATATGGGCGCATGGTATCACGCAACCAAGTACGCTGTCGAAGCGTTTAGTGACGCATTACGAATG
GAGACTAAAGACTTTGGCATTAAAGTTGCAATTATTGAACCTGGTGGGATTAAAACCAACTGGGGATTCATTGCTGCGGA
TCATTTAGAAGCCTCAGCACGTCACAGTGCATATCAAACACAAGCGACCAAGGCTGCCGCGGGTATGCGCCGACAATACT
CGTCGCGAATGATGTCTGATCCAAAAATTATTTCTAAAGCTATTTCGAAGGCGGTCAATCAGAAACGACCACGGGTGCGT
TATTTAATTGGATTTGGGGCTAAACCGCTGGTACTTGCTAAGGCGATTTTACCGACTCGTGTTTTTGATTTTATCATGAT
GCATGCCAGTTAG

Upstream 100 bases:

>100_bases
AAATGGCATATTATGTTATGATGATGACGTGATAAATCATTAAGCCGTTGCGATTTTCTATGTAAACTATTGTTATTGAA
AAACATAGGAGGTCATTGAG

Downstream 100 bases:

>100_bases
TAGGAGTGATTAGTGTGAAGATTATGGTTTCTGAACAGTTTCAGTGTTTTATGGCAAGCCTTGGCGTTGATTTAAATAGC
CTGCTTGAAGCTGCCGGTAT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MAVILITGASSGIGFQTAKDLAQQGHVVYGAARRLNKLEALAPYGVKPLSLDITNEQSLSQAVATLIASEGRIDVLINNA
GYGSYGAVEDVSIDEARQQFEVNLFGMARLTQLVLPYMRAQREGRIINTSSMGGRLVSYMGAWYHATKYAVEAFSDALRM
ETKDFGIKVAIIEPGGIKTNWGFIAADHLEASARHSAYQTQATKAAAGMRRQYSSRMMSDPKIISKAISKAVNQKRPRVR
YLIGFGAKPLVLAKAILPTRVFDFIMMHAS

Sequences:

>Translated_270_residues
MAVILITGASSGIGFQTAKDLAQQGHVVYGAARRLNKLEALAPYGVKPLSLDITNEQSLSQAVATLIASEGRIDVLINNA
GYGSYGAVEDVSIDEARQQFEVNLFGMARLTQLVLPYMRAQREGRIINTSSMGGRLVSYMGAWYHATKYAVEAFSDALRM
ETKDFGIKVAIIEPGGIKTNWGFIAADHLEASARHSAYQTQATKAAAGMRRQYSSRMMSDPKIISKAISKAVNQKRPRVR
YLIGFGAKPLVLAKAILPTRVFDFIMMHAS
>Mature_269_residues
AVILITGASSGIGFQTAKDLAQQGHVVYGAARRLNKLEALAPYGVKPLSLDITNEQSLSQAVATLIASEGRIDVLINNAG
YGSYGAVEDVSIDEARQQFEVNLFGMARLTQLVLPYMRAQREGRIINTSSMGGRLVSYMGAWYHATKYAVEAFSDALRME
TKDFGIKVAIIEPGGIKTNWGFIAADHLEASARHSAYQTQATKAAAGMRRQYSSRMMSDPKIISKAISKAVNQKRPRVRY
LIGFGAKPLVLAKAILPTRVFDFIMMHAS

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI22507405, Length=280, Percent_Identity=33.9285714285714, Blast_Score=127, Evalue=9e-30,
Organism=Homo sapiens, GI44680136, Length=259, Percent_Identity=29.3436293436293, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI44680133, Length=259, Percent_Identity=29.3436293436293, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI17738292, Length=259, Percent_Identity=29.3436293436293, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI7657478, Length=270, Percent_Identity=28.8888888888889, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI150247226, Length=286, Percent_Identity=33.2167832167832, Blast_Score=111, Evalue=5e-25,
Organism=Homo sapiens, GI19743808, Length=278, Percent_Identity=28.7769784172662, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI20149619, Length=203, Percent_Identity=33.9901477832512, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI40548397, Length=286, Percent_Identity=29.7202797202797, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI214010158, Length=286, Percent_Identity=29.7202797202797, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI214010156, Length=286, Percent_Identity=29.7202797202797, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI22758144, Length=286, Percent_Identity=29.7202797202797, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI50726952, Length=288, Percent_Identity=31.25, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=33.8624338624339, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI223718074, Length=266, Percent_Identity=28.9473684210526, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI109715829, Length=197, Percent_Identity=31.9796954314721, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI4504503, Length=286, Percent_Identity=29.7202797202797, Blast_Score=95, Evalue=8e-20,
Organism=Homo sapiens, GI119392083, Length=261, Percent_Identity=31.8007662835249, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI59889578, Length=138, Percent_Identity=37.6811594202899, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI157739938, Length=239, Percent_Identity=23.8493723849372, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI4503817, Length=191, Percent_Identity=27.2251308900524, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI32483357, Length=186, Percent_Identity=29.0322580645161, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI225579078, Length=201, Percent_Identity=31.3432835820896, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705855, Length=182, Percent_Identity=30.2197802197802, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7705925, Length=183, Percent_Identity=27.3224043715847, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1786701, Length=264, Percent_Identity=34.469696969697, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI87082100, Length=223, Percent_Identity=30.9417040358744, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=32.7683615819209, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787335, Length=181, Percent_Identity=33.7016574585635, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=32.972972972973, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786812, Length=177, Percent_Identity=26.5536723163842, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790717, Length=187, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI87082160, Length=183, Percent_Identity=28.9617486338798, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787905, Length=135, Percent_Identity=32.5925925925926, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=279, Percent_Identity=26.5232974910394, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17557780, Length=293, Percent_Identity=28.3276450511945, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17570069, Length=229, Percent_Identity=31.4410480349345, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI32563809, Length=286, Percent_Identity=28.3216783216783, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17507613, Length=286, Percent_Identity=28.3216783216783, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71997402, Length=224, Percent_Identity=31.25, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI193210355, Length=277, Percent_Identity=27.0758122743682, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=30, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=191, Percent_Identity=31.9371727748691, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=190, Percent_Identity=30.5263157894737, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=30.9644670050761, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=216, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=29.0816326530612, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=193, Percent_Identity=28.4974093264249, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=26.1538461538462, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=29.9492385786802, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=29.0816326530612, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=186, Percent_Identity=26.8817204301075, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=184, Percent_Identity=27.7173913043478, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=196, Percent_Identity=27.5510204081633, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=229, Percent_Identity=27.5109170305677, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=208, Percent_Identity=25.9615384615385, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=207, Percent_Identity=25.6038647342995, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=36.0824742268041, Blast_Score=101, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6322067, Length=184, Percent_Identity=32.0652173913043, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6322227, Length=252, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=193, Percent_Identity=30.0518134715026, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6320089, Length=187, Percent_Identity=30.4812834224599, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322226, Length=186, Percent_Identity=28.494623655914, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21358495, Length=187, Percent_Identity=35.8288770053476, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=35.4838709677419, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=34.7593582887701, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=31.2820512820513, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI23397609, Length=183, Percent_Identity=33.879781420765, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24580925, Length=193, Percent_Identity=32.6424870466321, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007238, Length=185, Percent_Identity=30.2702702702703, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI21356301, Length=238, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24641232, Length=194, Percent_Identity=32.4742268041237, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24644339, Length=186, Percent_Identity=31.7204301075269, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24643142, Length=184, Percent_Identity=32.0652173913043, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640442, Length=189, Percent_Identity=32.8042328042328, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24641388, Length=197, Percent_Identity=31.9796954314721, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24651139, Length=192, Percent_Identity=31.25, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19922066, Length=259, Percent_Identity=25.4826254826255, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648944, Length=191, Percent_Identity=30.8900523560209, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI116007234, Length=195, Percent_Identity=32.3076923076923, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648693, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355889, Length=195, Percent_Identity=30.2564102564103, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45554248, Length=246, Percent_Identity=30.0813008130081, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24640117, Length=246, Percent_Identity=30.0813008130081, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007232, Length=185, Percent_Identity=30.8108108108108, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI20128793, Length=265, Percent_Identity=24.5283018867925, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24647946, Length=196, Percent_Identity=29.0816326530612, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45553409, Length=196, Percent_Identity=29.0816326530612, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24647948, Length=196, Percent_Identity=29.0816326530612, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29449; Mature: 29318

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVILITGASSGIGFQTAKDLAQQGHVVYGAARRLNKLEALAPYGVKPLSLDITNEQSLS
CEEEEEECCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH
QAVATLIASEGRIDVLINNAGYGSYGAVEDVSIDEARQQFEVNLFGMARLTQLVLPYMRA
HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QREGRIINTSSMGGRLVSYMGAWYHATKYAVEAFSDALRMETKDFGIKVAIIEPGGIKTN
HCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCC
WGFIAADHLEASARHSAYQTQATKAAAGMRRQYSSRMMSDPKIISKAISKAVNQKRPRVR
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEE
YLIGFGAKPLVLAKAILPTRVFDFIMMHAS
EEEECCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVILITGASSGIGFQTAKDLAQQGHVVYGAARRLNKLEALAPYGVKPLSLDITNEQSLS
EEEEEECCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH
QAVATLIASEGRIDVLINNAGYGSYGAVEDVSIDEARQQFEVNLFGMARLTQLVLPYMRA
HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QREGRIINTSSMGGRLVSYMGAWYHATKYAVEAFSDALRMETKDFGIKVAIIEPGGIKTN
HCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCC
WGFIAADHLEASARHSAYQTQATKAAAGMRRQYSSRMMSDPKIISKAISKAVNQKRPRVR
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEE
YLIGFGAKPLVLAKAILPTRVFDFIMMHAS
EEEECCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]