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The map label for this gene is opuC [H]

Identifier: 28378309

GI number: 28378309

Start: 1463260

End: 1464195

Strand: Direct

Name: opuC [H]

Synonym: lp_1609

Alternate gene names: 28378309

Gene position: 1463260-1464195 (Clockwise)

Preceding gene: 28378308

Following gene: 28378310

Centisome position: 44.23

GC content: 40.28

Gene sequence:

>936_bases
ATGAAGAAAATTAAAAAGTGGTTGTTAGGTGTTTTCGCAACGGTCGCCAGTGCGTTATTATTGGCCGGCTGTGGCTTTCC
GGGTTTGTCAGGAACTTCATCCGATACGATCCGGATTGCGTCACAAAACACGACTGAACAACAGATCATGGCGTACATGA
TTCAAGATATGATTAAGCATTATTCTAATTTGAATACGACGATCATTAACAATTTAGGTTCTGGGACGGTTAGTTTCAAT
GCTTTGAAGAATGATCAGGCTGATATTTCAGCGATTCGTTACACTGGGACGGACTTAACGACGATTCTGGGCGAAAAGAT
GGATCGGAGTAATATCAAGTCGATTGACCAAAAAGTTCGCTCACAGTTCAACAGCAAGTATCAAATGACCTATTTCCCAA
GTTATGGGTTCGCAGATACCTATGCTTTTATGGTGACGAAAGCGACGGCCAAAAAATATCATCTAAATACGGTTAGTGAT
ATGAAAAAAGTAGCCTCGAAGCTGACGGTCGGTTTGGATCAAATCTGGACTGAACGAAAAGGTGACGGCTATCCTGCCTT
TAAGAAGTTGTATGGCTTTCAATTTGGGAAGACTTATCCAATGCAAATTGGTTTAGTTTATGATGCCTTGGAATCAGGTA
AAATGGATGCCATCCTCGGATACTCGACTGATGGTCGGATTGGTAGTTATGATCTGAAGATTTTAAAGGATGATAAGAAT
TTCTTCCCACCATACAATGCGAGTGCGGTTGCAACGAACAAGATCTTGAAAGCTCATCCGAAGTTGAAGCCAATCTTGAA
TCGATTAAACGGTAAAATCAGCTTAAAGACGATGCAAAACTTGAACTATCAAGTTGATAATAACTTAGTGGAACCGGAAG
TTGTGGCTAAACAGTTCCTTGAAAAACATAATTACTTTGAAGGGAGTGACAAATAA

Upstream 100 bases:

>100_bases
GATTCCAGTGATTATCTTAGCCCTCATCGTTGATTGGCTGTTGGGTAAACTAGAAGCAGCGGTTACCCCAAGAACCACAC
AAGCGTAGGGGGGATTAAAG

Downstream 100 bases:

>100_bases
TGGCTCAGATGAACTTACTGCAACAGTTGATATATTATTACCAACAAAACGGTGTGTACGTGTTAAGCCAGTTCTCACGT
CACTTCTTGATTTCAATTTA

Product: glycine betaine/carnitine/choline ABC transporter, substrate binding protein

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKKIKKWLLGVFATVASALLLAGCGFPGLSGTSSDTIRIASQNTTEQQIMAYMIQDMIKHYSNLNTTIINNLGSGTVSFN
ALKNDQADISAIRYTGTDLTTILGEKMDRSNIKSIDQKVRSQFNSKYQMTYFPSYGFADTYAFMVTKATAKKYHLNTVSD
MKKVASKLTVGLDQIWTERKGDGYPAFKKLYGFQFGKTYPMQIGLVYDALESGKMDAILGYSTDGRIGSYDLKILKDDKN
FFPPYNASAVATNKILKAHPKLKPILNRLNGKISLKTMQNLNYQVDNNLVEPEVVAKQFLEKHNYFEGSDK

Sequences:

>Translated_311_residues
MKKIKKWLLGVFATVASALLLAGCGFPGLSGTSSDTIRIASQNTTEQQIMAYMIQDMIKHYSNLNTTIINNLGSGTVSFN
ALKNDQADISAIRYTGTDLTTILGEKMDRSNIKSIDQKVRSQFNSKYQMTYFPSYGFADTYAFMVTKATAKKYHLNTVSD
MKKVASKLTVGLDQIWTERKGDGYPAFKKLYGFQFGKTYPMQIGLVYDALESGKMDAILGYSTDGRIGSYDLKILKDDKN
FFPPYNASAVATNKILKAHPKLKPILNRLNGKISLKTMQNLNYQVDNNLVEPEVVAKQFLEKHNYFEGSDK
>Mature_311_residues
MKKIKKWLLGVFATVASALLLAGCGFPGLSGTSSDTIRIASQNTTEQQIMAYMIQDMIKHYSNLNTTIINNLGSGTVSFN
ALKNDQADISAIRYTGTDLTTILGEKMDRSNIKSIDQKVRSQFNSKYQMTYFPSYGFADTYAFMVTKATAKKYHLNTVSD
MKKVASKLTVGLDQIWTERKGDGYPAFKKLYGFQFGKTYPMQIGLVYDALESGKMDAILGYSTDGRIGSYDLKILKDDKN
FFPPYNASAVATNKILKAHPKLKPILNRLNGKISLKTMQNLNYQVDNNLVEPEVVAKQFLEKHNYFEGSDK

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=316, Percent_Identity=22.4683544303797, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 34805; Mature: 34805

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKKWLLGVFATVASALLLAGCGFPGLSGTSSDTIRIASQNTTEQQIMAYMIQDMIKH
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
YSNLNTTIINNLGSGTVSFNALKNDQADISAIRYTGTDLTTILGEKMDRSNIKSIDQKVR
HCCCCHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHH
SQFNSKYQMTYFPSYGFADTYAFMVTKATAKKYHLNTVSDMKKVASKLTVGLDQIWTERK
HHHCCCEEEEECCCCCCHHHHHHHEEHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCC
GDGYPAFKKLYGFQFGKTYPMQIGLVYDALESGKMDAILGYSTDGRIGSYDLKILKDDKN
CCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCC
FFPPYNASAVATNKILKAHPKLKPILNRLNGKISLKTMQNLNYQVDNNLVEPEVVAKQFL
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEEEHHCCCEEECCCCCCHHHHHHHHH
EKHNYFEGSDK
HHCCCCCCCCC
>Mature Secondary Structure
MKKIKKWLLGVFATVASALLLAGCGFPGLSGTSSDTIRIASQNTTEQQIMAYMIQDMIKH
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH
YSNLNTTIINNLGSGTVSFNALKNDQADISAIRYTGTDLTTILGEKMDRSNIKSIDQKVR
HCCCCHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHH
SQFNSKYQMTYFPSYGFADTYAFMVTKATAKKYHLNTVSDMKKVASKLTVGLDQIWTERK
HHHCCCEEEEECCCCCCHHHHHHHEEHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCC
GDGYPAFKKLYGFQFGKTYPMQIGLVYDALESGKMDAILGYSTDGRIGSYDLKILKDDKN
CCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCC
FFPPYNASAVATNKILKAHPKLKPILNRLNGKISLKTMQNLNYQVDNNLVEPEVVAKQFL
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEEEHHCCCEEECCCCCCHHHHHHHHH
EKHNYFEGSDK
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]