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The map label for this gene is nusB

Identifier: 28378299

GI number: 28378299

Start: 1454012

End: 1454431

Strand: Direct

Name: nusB

Synonym: lp_1598

Alternate gene names: 28378299

Gene position: 1454012-1454431 (Clockwise)

Preceding gene: 28378298

Following gene: 28378300

Centisome position: 43.95

GC content: 42.38

Gene sequence:

>420_bases
GTGAGTTTAACGCGTCATGAAATCCGGGAAAAAGCATTTCAAGCTTTATTCGCGTTGAATGCTAACCCAGACGCTGATGA
AAATCAGTTGTTCCAACAGTTACTCAACCCTGAAGAAACGGATGCAGTTGAAATTCCCGCATATTTAAGTACGTTAGTAA
CTGGTGTTCGTGAACATCAAGTTGAATTAGACGCTCAAATTCAGCCTTATTTAAGTCAGAAGTGGTCGTTGGACCGACTG
GCTAAGACCGATTTGATTATCTTACGCATCGCGTTCTTTGAATTGCAATTTGTTGACGACGTTCCAACTAAGGTCGCGGT
TAATGAAGCAATTGAATTGACAAAGGCGTTCAGTGATGACCGCTCTCGGAAATTCGTTAGCGGGGTGCTTGGTAAAGTGG
TTAAAAACCAAGCCAATTAG

Upstream 100 bases:

>100_bases
CTGGTATCGTGACTGAGAAGACTGAAAGTGCCATTGATCCAAACAACTTGTTTGGTGATGAAGATACCCAGACCGATGAA
AATGAAGATGGTGAAGAATC

Downstream 100 bases:

>100_bases
TCTAAAACCGAACAATCTTATGTTCTACCGTAAAAGTCTGGCGATTTGCCAGACTTTTTTTAATAACTTATTAGTAAACC
GGTCATAAATCATTGTGGTG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEETDAVEIPAYLSTLVTGVREHQVELDAQIQPYLSQKWSLDRL
AKTDLIILRIAFFELQFVDDVPTKVAVNEAIELTKAFSDDRSRKFVSGVLGKVVKNQAN

Sequences:

>Translated_139_residues
MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEETDAVEIPAYLSTLVTGVREHQVELDAQIQPYLSQKWSLDRL
AKTDLIILRIAFFELQFVDDVPTKVAVNEAIELTKAFSDDRSRKFVSGVLGKVVKNQAN
>Mature_138_residues
SLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEETDAVEIPAYLSTLVTGVREHQVELDAQIQPYLSQKWSLDRLA
KTDLIILRIAFFELQFVDDVPTKVAVNEAIELTKAFSDDRSRKFVSGVLGKVVKNQAN

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=125, Percent_Identity=41.6, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_LACPL (Q88WM9)

Other databases:

- EMBL:   AL935256
- RefSeq:   NP_785191.1
- ProteinModelPortal:   Q88WM9
- SMR:   Q88WM9
- GeneID:   1063579
- GenomeReviews:   AL935263_GR
- KEGG:   lpl:lp_1598
- NMPDR:   fig|220668.1.peg.1325
- HOGENOM:   HBG734409
- OMA:   FAYDYDK
- ProtClustDB:   PRK00202
- BioCyc:   LPLA220668:LP_1598-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 15758; Mature: 15627

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEETDAVEIPAYLSTLVTGVREHQ
CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHH
VELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAVNEAIELTKAFSDD
HHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
RSRKFVSGVLGKVVKNQAN
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEETDAVEIPAYLSTLVTGVREHQ
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHH
VELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAVNEAIELTKAFSDD
HHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCH
RSRKFVSGVLGKVVKNQAN
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566