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The map label for this gene is glnR [H]

Identifier: 28378284

GI number: 28378284

Start: 1443126

End: 1443506

Strand: Direct

Name: glnR [H]

Synonym: lp_1580

Alternate gene names: 28378284

Gene position: 1443126-1443506 (Clockwise)

Preceding gene: 28378283

Following gene: 28378285

Centisome position: 43.62

GC content: 46.98

Gene sequence:

>381_bases
ATGAAGGAAAAGGAACTCCGTCGCTCGTTGGCCGTCTTGCCAATTGGTACGGTTATGAAGCTGACCAATTTGTCTGCGCG
ACAAATTCGCTACTATGAAGAGCAAGAATTGATTACGCCGGAACGAAATGCCGGTAATCGGCGAATGTTTTCGTTGAATG
ATGTTGATCGTTTGCTTGAAATCAAGGATTACTTAGCAGATGGCATCAATATGGCTGGAATCAAAGAAATATATGCGCTC
CAAAAACAGCGAGCTGAGCAGAAGCAAGCTGACTTGGCTAAGCCGCTAACTGATCGCGATGTGCGCCGAATCCTTCATGA
TGAATTCCTGAATCTCGGAGGCTTGCAGTCCGACAAGGGCCCCAATTATCCGGCACACTAA

Upstream 100 bases:

>100_bases
GTATACCTATGATAAAACGTGTGATATTTTCTAACATGAATGATTGACATTCGATGATAACATTGCTAATATTAAGTCTG
TATTAAAGAGGAGGGTCGTT

Downstream 100 bases:

>100_bases
GATGTTTGCATTCGTTAGTCAATCAATTTAAGGAGCGATTTTCATGGCAAAACAGTCCTACTCAAAAGACGATATCCGCC
GCATCGTCAAAGAAGAAAAC

Product: glutamine synthetase repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKEKELRRSLAVLPIGTVMKLTNLSARQIRYYEEQELITPERNAGNRRMFSLNDVDRLLEIKDYLADGINMAGIKEIYAL
QKQRAEQKQADLAKPLTDRDVRRILHDEFLNLGGLQSDKGPNYPAH

Sequences:

>Translated_126_residues
MKEKELRRSLAVLPIGTVMKLTNLSARQIRYYEEQELITPERNAGNRRMFSLNDVDRLLEIKDYLADGINMAGIKEIYAL
QKQRAEQKQADLAKPLTDRDVRRILHDEFLNLGGLQSDKGPNYPAH
>Mature_126_residues
MKEKELRRSLAVLPIGTVMKLTNLSARQIRYYEEQELITPERNAGNRRMFSLNDVDRLLEIKDYLADGINMAGIKEIYAL
QKQRAEQKQADLAKPLTDRDVRRILHDEFLNLGGLQSDKGPNYPAH

Specific function: Repressor for the glnRA operon. Binds specifically to the promoter region of the glnRA operon [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 14552; Mature: 14552

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKELRRSLAVLPIGTVMKLTNLSARQIRYYEEQELITPERNAGNRRMFSLNDVDRLLE
CCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHH
IKDYLADGINMAGIKEIYALQKQRAEQKQADLAKPLTDRDVRRILHDEFLNLGGLQSDKG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
PNYPAH
CCCCCC
>Mature Secondary Structure
MKEKELRRSLAVLPIGTVMKLTNLSARQIRYYEEQELITPERNAGNRRMFSLNDVDRLLE
CCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHH
IKDYLADGINMAGIKEIYALQKQRAEQKQADLAKPLTDRDVRRILHDEFLNLGGLQSDKG
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
PNYPAH
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]