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The map label for this gene is yodB [H]

Identifier: 28378264

GI number: 28378264

Start: 1422569

End: 1422889

Strand: Direct

Name: yodB [H]

Synonym: lp_1557

Alternate gene names: 28378264

Gene position: 1422569-1422889 (Clockwise)

Preceding gene: 28378263

Following gene: 28378265

Centisome position: 43.0

GC content: 47.04

Gene sequence:

>321_bases
GTGGATTTCGAACTGTGTCCAAAATTTGAAAAGACGTTCTCAATTCTAGGGAAAAAGTGGAACGGTTTAATTATCGATGT
TTTACTGGAAGACGGTCCCCAACGCTTTAAGAATCTGGCACGCCGGATTCCTAAGTGCAGTGATCGGGTGCTGGTCGTTC
GTCTCAAGGAATTGGAAGAAAACGGCATTGTGAGTCGGGTAACCCATTGTGACTCTGCCCTGATTGAGTATCGCTTGACT
ACGAAGGGGCAAGATTTACGACAGGTCATGGATACGGTCCATAACTGGTCTGATAAGTGGTTCAGCCCGGCCGAATCCTA
A

Upstream 100 bases:

>100_bases
CAACTAGATCGGTTCCGAGGCAAGGTCTCCGCCGGTTAATTCAATAATTGGGGGTCATTGCATGTCAGAAATGCTAGCTG
ACACGGTAACAGAATCCAAC

Downstream 100 bases:

>100_bases
TACGGGGTTGACGTGCAGGGCACTTTGCCATAAACTGACAATGTAGATAAAAGCCTTGACGAGAAATAGTAGTTAGTTAC
GGCGTCGTAGGGACGGGTGT

Product: transcription regulator (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MDFELCPKFEKTFSILGKKWNGLIIDVLLEDGPQRFKNLARRIPKCSDRVLVVRLKELEENGIVSRVTHCDSALIEYRLT
TKGQDLRQVMDTVHNWSDKWFSPAES

Sequences:

>Translated_106_residues
MDFELCPKFEKTFSILGKKWNGLIIDVLLEDGPQRFKNLARRIPKCSDRVLVVRLKELEENGIVSRVTHCDSALIEYRLT
TKGQDLRQVMDTVHNWSDKWFSPAES
>Mature_106_residues
MDFELCPKFEKTFSILGKKWNGLIIDVLLEDGPQRFKNLARRIPKCSDRVLVVRLKELEENGIVSRVTHCDSALIEYRLT
TKGQDLRQVMDTVHNWSDKWFSPAES

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA [H]

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12351; Mature: 12351

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFELCPKFEKTFSILGKKWNGLIIDVLLEDGPQRFKNLARRIPKCSDRVLVVRLKELEE
CCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCEEEHHHHHHCC
NGIVSRVTHCDSALIEYRLTTKGQDLRQVMDTVHNWSDKWFSPAES
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDFELCPKFEKTFSILGKKWNGLIIDVLLEDGPQRFKNLARRIPKCSDRVLVVRLKELEE
CCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCEEEHHHHHHCC
NGIVSRVTHCDSALIEYRLTTKGQDLRQVMDTVHNWSDKWFSPAES
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]