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The map label for this gene is ysgA [H]

Identifier: 28378262

GI number: 28378262

Start: 1421124

End: 1421897

Strand: Direct

Name: ysgA [H]

Synonym: lp_1555

Alternate gene names: 28378262

Gene position: 1421124-1421897 (Clockwise)

Preceding gene: 28378259

Following gene: 28378263

Centisome position: 42.96

GC content: 47.93

Gene sequence:

>774_bases
TTGACGATGGAAAAAATTAATTCATTACAAAATGCGCACGTCAAGGCGTGGAAAAAGCTCCAAACAAAGAAGGGACGCAA
ACAACAGGGACAATACTTGCTAGATGGTTGGCATTTAGTCAACGAAGCAGTTAAAGCACACGTCGCGATTCAGACCTTGC
TCATTACTGCCAAGCAATTGGCGACCGAACCGGACTTGACTCATTTTCCAGCGGTCATTGAAATCTCTGATGAAGTCGCC
AAACATATCAGTGCGACGGTGACGCCGCAGGGGGTGTTTGCGCTGGCGACCCTGCCTGCTGCAATTGAAGATCTATCACA
ATTAGATTTAACGCGGCCTTGGTTACTGCTCGATAATGTTCAAGATCCCGGAAATATTGGAACCATGGTACGGACTGCGG
ATGCTGCGGGTTTTGCCGGCGTCGCTTTCGGTACCGGGACGGTGGACATCCATCAACCCAAAGTTGAACGAGCTATGCAG
GGGAGTCAGTTTCATTTACAACTGATTAGTACTGATCTCGACAAGTTGGTTGACCAATTGCAGGCGCAGGGTTCACCAGT
CTACGGTTCAGAGTTAAATCCACAGGCAGCCCGGTATTTAGATATTGACGCGCCGGCTAGTTTTGGCTTGATCATGGGAA
ACGAAGGTAATGGAATGAGTCGGGAATTATTGGCACGGACAGACCAAAACTTATACATTCCCATCAAGGGGCAAGCAGAA
TCGTTAAATGTAGCCGTGGCTGCTGGCGTTTTAATGTTCGGTTTATATCGCTAA

Upstream 100 bases:

>100_bases
CGATATGCTATACTTGGGATAAAACGGACACTTTCGAATGATACAGGGTGCCCCGAATTGACAAGACCGGCTGATGTTTC
AACCGATTAATTAAAGGAAG

Downstream 100 bases:

>100_bases
CTTACAATTAGTAAGAAAATGCTAAAATCCAGGTAAAATACTTTCAAAATGACTGGCTTTTTAGTAGAATAGCCGTAGAT
ATTAGCAAAGGGAGCTTTAG

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTMEKINSLQNAHVKAWKKLQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITAKQLATEPDLTHFPAVIEISDEVA
KHISATVTPQGVFALATLPAAIEDLSQLDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQ
GSQFHLQLISTDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTDQNLYIPIKGQAE
SLNVAVAAGVLMFGLYR

Sequences:

>Translated_257_residues
MTMEKINSLQNAHVKAWKKLQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITAKQLATEPDLTHFPAVIEISDEVA
KHISATVTPQGVFALATLPAAIEDLSQLDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQ
GSQFHLQLISTDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTDQNLYIPIKGQAE
SLNVAVAAGVLMFGLYR
>Mature_256_residues
TMEKINSLQNAHVKAWKKLQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITAKQLATEPDLTHFPAVIEISDEVAK
HISATVTPQGVFALATLPAAIEDLSQLDLTRPWLLLDNVQDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQG
SQFHLQLISTDLDKLVDQLQAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTDQNLYIPIKGQAES
LNVAVAAGVLMFGLYR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=158, Percent_Identity=32.2784810126582, Blast_Score=83, Evalue=2e-16,
Organism=Escherichia coli, GI1790623, Length=181, Percent_Identity=31.4917127071823, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790083, Length=153, Percent_Identity=30.718954248366, Blast_Score=68, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24666840, Length=271, Percent_Identity=26.5682656826568, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27861; Mature: 27730

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMEKINSLQNAHVKAWKKLQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITAKQL
CCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATEPDLTHFPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQLDLTRPWLLLDNV
CCCCCCCCCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
QDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQLISTDLDKLVDQL
CCCCCCCCEEEECCCCCCCEEEECCCEEEECCHHHHHHHCCCCEEEEHHHHHHHHHHHHH
QAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTDQNLYIPIKGQAE
HHCCCCCCCCCCCCCHHEEEECCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEECCCCC
SLNVAVAAGVLMFGLYR
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TMEKINSLQNAHVKAWKKLQTKKGRKQQGQYLLDGWHLVNEAVKAHVAIQTLLITAKQL
CHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATEPDLTHFPAVIEISDEVAKHISATVTPQGVFALATLPAAIEDLSQLDLTRPWLLLDNV
CCCCCCCCCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
QDPGNIGTMVRTADAAGFAGVAFGTGTVDIHQPKVERAMQGSQFHLQLISTDLDKLVDQL
CCCCCCCCEEEECCCCCCCEEEECCCEEEECCHHHHHHHCCCCEEEEHHHHHHHHHHHHH
QAQGSPVYGSELNPQAARYLDIDAPASFGLIMGNEGNGMSRELLARTDQNLYIPIKGQAE
HHCCCCCCCCCCCCCHHEEEECCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEECCCCC
SLNVAVAAGVLMFGLYR
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]