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The map label for this gene is yffB [H]

Identifier: 28377816

GI number: 28377816

Start: 926465

End: 926989

Strand: Direct

Name: yffB [H]

Synonym: lp_1004

Alternate gene names: 28377816

Gene position: 926465-926989 (Clockwise)

Preceding gene: 28377815

Following gene: 28377817

Centisome position: 28.0

GC content: 46.67

Gene sequence:

>525_bases
ATGCAACTCGCAAAATCGTTTGAACAGGCCGCCTGCGTGTTGGTATTGTTGGCTACACAGCAACCGGAGATTCCGTTGAC
TGCGGATGTCTTGCACGAGCGAATTGGTGGTTCCGCTTCGTATATTCGTAAGATTATTCGTAAATTAGTAGTGGCAGGAC
TGGTCACGTCCACCAGTGGAAATAACGGGGGTGTCCACTTGGCACGCTCACCTGAGGACATTTCAATTACAGATGTGGTC
GCGGCCATCGAGGGGACGTTGCAGACCTTTCCGAATTATGGTTATTTTGACCGAGTATTTAAGGACGTTGAACCGGTCGC
TCATGAAGGGACGAAAGTGGTCAACGGGATTTTTTCGCGAGCGGATCAATTATGGTTAGATTTTTTAGACCAGCAAAAAC
TGGCGACGTTGATCAAGGAATTATTAGTTGTTACTCAAATCCCAGTGTTGGATTGGACGAATTACTCAGATGATAAAATG
GCCCAATTAAATGCGTTGCTTAGTCGGATGCGGGCACATAAGTGA

Upstream 100 bases:

>100_bases
AGTATGATGCTGTTCGCCATCCAGATTACGCCCCGTTTGGCGCTGGTCAGACGGAGTTATTCTTTGATTGTGTGGAATTA
AACCTTTAGGAGGTGAGTTA

Downstream 100 bases:

>100_bases
GACGTCGTACAAACTCGATAAAAATTGGGAGCGGTTTCGCTTGGTAAACCAATATTGACGCGCTTTTGCCAATCGGGGAT
CATTTTCAAAATGATACACT

Product: transcription regulator (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSGNNGGVHLARSPEDISITDVV
AAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSRADQLWLDFLDQQKLATLIKELLVVTQIPVLDWTNYSDDKM
AQLNALLSRMRAHK

Sequences:

>Translated_174_residues
MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSGNNGGVHLARSPEDISITDVV
AAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSRADQLWLDFLDQQKLATLIKELLVVTQIPVLDWTNYSDDKM
AQLNALLSRMRAHK
>Mature_174_residues
MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSGNNGGVHLARSPEDISITDVV
AAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSRADQLWLDFLDQQKLATLIKELLVVTQIPVLDWTNYSDDKM
AQLNALLSRMRAHK

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 19219; Mature: 19219

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01332 UPF0074

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSG
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
NNGGVHLARSPEDISITDVVAAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSR
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADQLWLDFLDQQKLATLIKELLVVTQIPVLDWTNYSDDKMAQLNALLSRMRAHK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSG
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
NNGGVHLARSPEDISITDVVAAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSR
CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADQLWLDFLDQQKLATLIKELLVVTQIPVLDWTNYSDDKMAQLNALLSRMRAHK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7773380; 11337471 [H]