| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is ifcA [H]
Identifier: 28377775
GI number: 28377775
Start: 883915
End: 885804
Strand: Direct
Name: ifcA [H]
Synonym: lp_0952
Alternate gene names: 28377775
Gene position: 883915-885804 (Clockwise)
Preceding gene: 28377773
Following gene: 28377782
Centisome position: 26.72
GC content: 45.08
Gene sequence:
>1890_bases ATGGATTTTGAAAGGGTGGTCAGCATGCTCAAAAAAATGAATCAGGTTAAATGGGATTATCAATATGATACGGTAGTTAT TGGCTTTGGTGGTGCCGGGGCGACAGCAGCGCGGTTTGCGGCGGATGCACATGCGAAGGTATTGCTCACGGATGCAGCGC CGAATGGTCATGAAGGAGGCAATACCCGTTATTCTGCCCAACTCTTAGGAACGGTAGATAGTTTCGATGAGGGTAAAAAA TATTATCAAAACTTAACGGCACCCATGCAATTAGACGATAGTATGGTTGATACTTTCGTAGCGGGCATGGCGAATATGCG CGACTATGTTCAAAAGTATCTCAATGTTGACCCGGTGAGTGTCAAAAATGATTTTACAGCTGCTGATTCTCCAATTTCAT TAGACAGTGCAGTTCATGAGTTTCCTGAATTTGATGGAGTCCAATCCTATGACTTTACAACTGTCCATCATGGCATTTTT GATGCAGCTTTGTGGAAAATTCTTCGACAAAAAGTGTTAGATCGGCAGCAACAGATTGATGTCTGGCTTAGTGCTCCGGC ACAACATCTGATTCAAGATCCCACTACGAATACAATTATCGGTGTCCAAATCGAACGTCAGCATCGTTTAGTTAATGTTC GAGCTACCAATGGTGTAGTCCTAGCATGTGGTGGTTTTGAAAATAATCAACAAGCCATCCAGGACTACCTTGGTGCTGAG CACTTGGCACCATTAGGCACGCTGTTTAATAAGGGTGCTGGTATTAAGATGGCCCAAGAAGTTGGCGCGGACTTTTGGCA CATGCAAAATTATGAATCACTCGGATTTTTACATGGTCTTTCGATTGCCGTACCACAAGGTGAACGTGGTCGCTTGATTT TAGGCTGGCCGGAAGTGAACCATGGTAGCGTTATTACGGTGGCTGATGACGGTAGTCGGTATTTTGATGAGAGTGAAGCC AACCGGCACGGTCACATTTATGATCATGGAATGTGGCGAGTACCGCGGACAAATGTCCATCCATACTTGGTTTTTGATGA AACTCAGTATCAACAGATGTTAGCAAGTCAATATACGCCGATTAATAATCTCACCGATTTAGTTGTGAAGGCCACTACTC TAAACGACTTAGCACGAGTTATGGAAGTTGATGGTACGGTACTTACCAAGACCGTTCATGATTTCAATTATTTTGTTGAG TCTGGTACTGACTACGCGTTTAATCGGCAGGTTGATACGATGCGGGCATTTGATGGTGGGCCATATTATGCGCTTAAGTT AACAAACAACGTACTTAATACCCAAGGGGGGCCACGTCGTAATGACCGGGCAGAGATTTTAGATGCAAATCAGCAACCTA TTCCGCACTTGTATGGTGCAGGTGAGTTGGGCGGTATTTGTGCAAATCAGTATCAAGGTGGCGGTAATTTAGCTGAATGC CTGATTTTTGGAAAAATCGCTGGTGAAAATGCAGCTAAACCTAAGGAAGAAACGACACAATTAGTCGATGAAAAAGCAGT GGCTAAGCCGGATGCGAATACTAGTGCTTCGGTGCATCAGACTGGTGCCAATGATTTGCTAGCTGAAGCATCACCGGACA TCACAGTTGGTGAACACCAATACTTAGGGCGCTCAGATGATGGCATTGGTGGGCAAGTTGTGGTTCGTATCACATATGTT GACCAACAATTAACTCATGTTGAAGTAGTTGAACAACATGAGACTGGTGAAGTTGGTGGTCAGGCAGTTGCCGAATTGCC GGCAAAAATGGTGGCTGCTAACACTTATGATGTGGATGCAGTTTCCGGCGCTTCTGTATCGAGCCGTGCCATCAAGGCCG CAGTCAAGGACGCGCTATCCCAGGCTGAACAGACCGTGTCAAATGATTAA
Upstream 100 bases:
>100_bases TCTATAAAAATGAAAGCGGTTATATAATACAGATGTAGTTAAAAAATGATTCTATTTGTGATTTAAATATCAATTTCAAT TGTGCTTTAGAATACGTTAA
Downstream 100 bases:
>100_bases CCACTGATCGCACAATCCACGAATCACCTAGTGCTTTTAGTATCTTTTAGTGCGTAATACCGGTAAACTAGAATTAACAA ATTCAATCAATGGAGGCCGC
Product: fumarate reductase, flavoprotein subunit precursor
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MDFERVVSMLKKMNQVKWDYQYDTVVIGFGGAGATAARFAADAHAKVLLTDAAPNGHEGGNTRYSAQLLGTVDSFDEGKK YYQNLTAPMQLDDSMVDTFVAGMANMRDYVQKYLNVDPVSVKNDFTAADSPISLDSAVHEFPEFDGVQSYDFTTVHHGIF DAALWKILRQKVLDRQQQIDVWLSAPAQHLIQDPTTNTIIGVQIERQHRLVNVRATNGVVLACGGFENNQQAIQDYLGAE HLAPLGTLFNKGAGIKMAQEVGADFWHMQNYESLGFLHGLSIAVPQGERGRLILGWPEVNHGSVITVADDGSRYFDESEA NRHGHIYDHGMWRVPRTNVHPYLVFDETQYQQMLASQYTPINNLTDLVVKATTLNDLARVMEVDGTVLTKTVHDFNYFVE SGTDYAFNRQVDTMRAFDGGPYYALKLTNNVLNTQGGPRRNDRAEILDANQQPIPHLYGAGELGGICANQYQGGGNLAEC LIFGKIAGENAAKPKEETTQLVDEKAVAKPDANTSASVHQTGANDLLAEASPDITVGEHQYLGRSDDGIGGQVVVRITYV DQQLTHVEVVEQHETGEVGGQAVAELPAKMVAANTYDVDAVSGASVSSRAIKAAVKDALSQAEQTVSND
Sequences:
>Translated_629_residues MDFERVVSMLKKMNQVKWDYQYDTVVIGFGGAGATAARFAADAHAKVLLTDAAPNGHEGGNTRYSAQLLGTVDSFDEGKK YYQNLTAPMQLDDSMVDTFVAGMANMRDYVQKYLNVDPVSVKNDFTAADSPISLDSAVHEFPEFDGVQSYDFTTVHHGIF DAALWKILRQKVLDRQQQIDVWLSAPAQHLIQDPTTNTIIGVQIERQHRLVNVRATNGVVLACGGFENNQQAIQDYLGAE HLAPLGTLFNKGAGIKMAQEVGADFWHMQNYESLGFLHGLSIAVPQGERGRLILGWPEVNHGSVITVADDGSRYFDESEA NRHGHIYDHGMWRVPRTNVHPYLVFDETQYQQMLASQYTPINNLTDLVVKATTLNDLARVMEVDGTVLTKTVHDFNYFVE SGTDYAFNRQVDTMRAFDGGPYYALKLTNNVLNTQGGPRRNDRAEILDANQQPIPHLYGAGELGGICANQYQGGGNLAEC LIFGKIAGENAAKPKEETTQLVDEKAVAKPDANTSASVHQTGANDLLAEASPDITVGEHQYLGRSDDGIGGQVVVRITYV DQQLTHVEVVEQHETGEVGGQAVAELPAKMVAANTYDVDAVSGASVSSRAIKAAVKDALSQAEQTVSND >Mature_629_residues MDFERVVSMLKKMNQVKWDYQYDTVVIGFGGAGATAARFAADAHAKVLLTDAAPNGHEGGNTRYSAQLLGTVDSFDEGKK YYQNLTAPMQLDDSMVDTFVAGMANMRDYVQKYLNVDPVSVKNDFTAADSPISLDSAVHEFPEFDGVQSYDFTTVHHGIF DAALWKILRQKVLDRQQQIDVWLSAPAQHLIQDPTTNTIIGVQIERQHRLVNVRATNGVVLACGGFENNQQAIQDYLGAE HLAPLGTLFNKGAGIKMAQEVGADFWHMQNYESLGFLHGLSIAVPQGERGRLILGWPEVNHGSVITVADDGSRYFDESEA NRHGHIYDHGMWRVPRTNVHPYLVFDETQYQQMLASQYTPINNLTDLVVKATTLNDLARVMEVDGTVLTKTVHDFNYFVE SGTDYAFNRQVDTMRAFDGGPYYALKLTNNVLNTQGGPRRNDRAEILDANQQPIPHLYGAGELGGICANQYQGGGNLAEC LIFGKIAGENAAKPKEETTQLVDEKAVAKPDANTSASVHQTGANDLLAEASPDITVGEHQYLGRSDDGIGGQVVVRITYV DQQLTHVEVVEQHETGEVGGQAVAELPAKMVAANTYDVDAVSGASVSSRAIKAAVKDALSQAEQTVSND
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI71986328, Length=305, Percent_Identity=23.6065573770492, Blast_Score=77, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 68742; Mature: 68742
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFERVVSMLKKMNQVKWDYQYDTVVIGFGGAGATAARFAADAHAKVLLTDAAPNGHEGG CCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHCCCCEEEEEEECCCCCCCCC NTRYSAQLLGTVDSFDEGKKYYQNLTAPMQLDDSMVDTFVAGMANMRDYVQKYLNVDPVS CCEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE VKNDFTAADSPISLDSAVHEFPEFDGVQSYDFTTVHHGIFDAALWKILRQKVLDRQQQID ECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH VWLSAPAQHLIQDPTTNTIIGVQIERQHRLVNVRATNGVVLACGGFENNQQAIQDYLGAE EEECCCHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCEEEEECCCCCCHHHHHHHHCHH HLAPLGTLFNKGAGIKMAQEVGADFWHMQNYESLGFLHGLSIAVPQGERGRLILGWPEVN HHHHHHHHHCCCCCCCHHHHCCCHHHHHCCCCHHHHHCCCEEEECCCCCCCEEEECCCCC HGSVITVADDGSRYFDESEANRHGHIYDHGMWRVPRTNVHPYLVFDETQYQQMLASQYTP CCCEEEEECCCCHHCCCCCCCCCCCEEECCEEECCCCCCCEEEEECCHHHHHHHHHHCCC INNLTDLVVKATTLNDLARVMEVDGTVLTKTVHDFNYFVESGTDYAFNRQVDTMRAFDGG CCCHHHHHEEHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCEECCCHHHHHHCCCC PYYALKLTNNVLNTQGGPRRNDRAEILDANQQPIPHLYGAGELGGICANQYQGGGNLAEC CEEEEEEECCHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEHHCCCCCCCCEEH LIFGKIAGENAAKPKEETTQLVDEKAVAKPDANTSASVHQTGANDLLAEASPDITVGEHQ EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHCCCCCCEECCCC YLGRSDDGIGGQVVVRITYVDQQLTHVEVVEQHETGEVGGQAVAELPAKMVAANTYDVDA CCCCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHCCHHHHCCCCCCCCC VSGASVSSRAIKAAVKDALSQAEQTVSND CCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDFERVVSMLKKMNQVKWDYQYDTVVIGFGGAGATAARFAADAHAKVLLTDAAPNGHEGG CCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHCCCCEEEEEEECCCCCCCCC NTRYSAQLLGTVDSFDEGKKYYQNLTAPMQLDDSMVDTFVAGMANMRDYVQKYLNVDPVS CCEEEEEEEECHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE VKNDFTAADSPISLDSAVHEFPEFDGVQSYDFTTVHHGIFDAALWKILRQKVLDRQQQID ECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH VWLSAPAQHLIQDPTTNTIIGVQIERQHRLVNVRATNGVVLACGGFENNQQAIQDYLGAE EEECCCHHHHHCCCCCCEEEEEEEECCCEEEEEEECCCEEEEECCCCCCHHHHHHHHCHH HLAPLGTLFNKGAGIKMAQEVGADFWHMQNYESLGFLHGLSIAVPQGERGRLILGWPEVN HHHHHHHHHCCCCCCCHHHHCCCHHHHHCCCCHHHHHCCCEEEECCCCCCCEEEECCCCC HGSVITVADDGSRYFDESEANRHGHIYDHGMWRVPRTNVHPYLVFDETQYQQMLASQYTP CCCEEEEECCCCHHCCCCCCCCCCCEEECCEEECCCCCCCEEEEECCHHHHHHHHHHCCC INNLTDLVVKATTLNDLARVMEVDGTVLTKTVHDFNYFVESGTDYAFNRQVDTMRAFDGG CCCHHHHHEEHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCEECCCHHHHHHCCCC PYYALKLTNNVLNTQGGPRRNDRAEILDANQQPIPHLYGAGELGGICANQYQGGGNLAEC CEEEEEEECCHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEHHCCCCCCCCEEH LIFGKIAGENAAKPKEETTQLVDEKAVAKPDANTSASVHQTGANDLLAEASPDITVGEHQ EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHCCCCCCEECCCC YLGRSDDGIGGQVVVRITYVDQQLTHVEVVEQHETGEVGGQAVAELPAKMVAANTYDVDA CCCCCCCCCCCEEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHCCHHHHCCCCCCCCC VSGASVSSRAIKAAVKDALSQAEQTVSND CCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]