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The map label for this gene is ydeP [H]

Identifier: 28377749

GI number: 28377749

Start: 852181

End: 852525

Strand: Direct

Name: ydeP [H]

Synonym: lp_0921

Alternate gene names: 28377749

Gene position: 852181-852525 (Clockwise)

Preceding gene: 28377748

Following gene: 28377751

Centisome position: 25.76

GC content: 42.32

Gene sequence:

>345_bases
ATGCGTACAATTACACCAATTGAGAACAGTCGGCGACATGAAGAATTTTGTCCATTGGATACAACTTTGAGTATCTTGTC
GGGTAAATGGAAATCAATTATTATCTGTCGATTAATGGGGAGTTCGCAGCGCTTTTCGTCCTTATTAAAAGGCATGCCGG
GCTGTACCAGTCGAATGTTGGCGATGCAACTAAAGGAATTAGTTGCGGATCAGATTGTGAGTCAACAAACGGTCGCTAAT
CATTCAGTTTATGAGTTAACGAACATTGGAGTATCACTAGTTCCAATCGTTGAAGCAATGGATCGATGGGGGAAGGCTTA
CCTTGAAACGTTACAGTTGGCGTAG

Upstream 100 bases:

>100_bases
TTGATGTAGTGGTAATCATTGTTTGGTCACTTAATAATATTAAACAGTTCAGTTATACCAAGAATATTATTATGATACAA
TTTTCGATGGAGGTGGCGAG

Downstream 100 bases:

>100_bases
TCGATTGGTCAACGCTTAGACTAAGTATAGGACGTCATTATTAGCCACTATTTTTAACAATCATAAAAATTGCTCGCAGG
AATCTTCGGAGCAGTTTTTT

Product: transcription regulator (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MRTITPIENSRRHEEFCPLDTTLSILSGKWKSIIICRLMGSSQRFSSLLKGMPGCTSRMLAMQLKELVADQIVSQQTVAN
HSVYELTNIGVSLVPIVEAMDRWGKAYLETLQLA

Sequences:

>Translated_114_residues
MRTITPIENSRRHEEFCPLDTTLSILSGKWKSIIICRLMGSSQRFSSLLKGMPGCTSRMLAMQLKELVADQIVSQQTVAN
HSVYELTNIGVSLVPIVEAMDRWGKAYLETLQLA
>Mature_114_residues
MRTITPIENSRRHEEFCPLDTTLSILSGKWKSIIICRLMGSSQRFSSLLKGMPGCTSRMLAMQLKELVADQIVSQQTVAN
HSVYELTNIGVSLVPIVEAMDRWGKAYLETLQLA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12784; Mature: 12784

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTITPIENSRRHEEFCPLDTTLSILSGKWKSIIICRLMGSSQRFSSLLKGMPGCTSRML
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
AMQLKELVADQIVSQQTVANHSVYELTNIGVSLVPIVEAMDRWGKAYLETLQLA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRTITPIENSRRHEEFCPLDTTLSILSGKWKSIIICRLMGSSQRFSSLLKGMPGCTSRML
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
AMQLKELVADQIVSQQTVANHSVYELTNIGVSLVPIVEAMDRWGKAYLETLQLA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]