Click here to switch to the map view.

The map label for this gene is rpmE

Identifier: 28377400

GI number: 28377400

Start: 458582

End: 458827

Strand: Direct

Name: rpmE

Synonym: lp_0512

Alternate gene names: 28377400

Gene position: 458582-458827 (Clockwise)

Preceding gene: 28377399

Following gene: 28377402

Centisome position: 13.86

GC content: 39.43

Gene sequence:

>246_bases
ATGCAAAAAGGAATTCATCCAGATTACCATTTAGTTGTGTTCCAAGACTCAACTACTGGTTTTAAGTTCATCTCTGGTTC
AACAGCAACTTCAGCAGAAACTGTTGAATGGGAAGATGGTAATACTTACCCATTGATCCGTGTTGAAATTACGTCAGATT
CACATCCATTCTACACTGGTAAGCAAAAGTTTACCAAGGCCGATGGTGCGGTCGATCGTTTCAACAAGAAATACGGTCTC
AAATAA

Upstream 100 bases:

>100_bases
TTGACGGGAAGCTGTGATTCGTGATAACATGTTTATCGTTGGTTAAAACTATGATAATCTCTGTTTCAGCAAATGATTCA
GGGCAAAGGAGCGAAATACA

Downstream 100 bases:

>100_bases
GCAGACAATTAAACGGCGTTCCGGCTTCGGCGGGGGCGTCTTTTTTGTATGTGCAAATCATCGACGCTCACAAACAAAGC
CGCACCAGTTCGAGTAATGA

Product: ribosomal protein L31

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MQKGIHPDYHLVVFQDSTTGFKFISGSTATSAETVEWEDGNTYPLIRVEITSDSHPFYTGKQKFTKADGAVDRFNKKYGL
K

Sequences:

>Translated_81_residues
MQKGIHPDYHLVVFQDSTTGFKFISGSTATSAETVEWEDGNTYPLIRVEITSDSHPFYTGKQKFTKADGAVDRFNKKYGL
K
>Mature_81_residues
MQKGIHPDYHLVVFQDSTTGFKFISGSTATSAETVEWEDGNTYPLIRVEITSDSHPFYTGKQKFTKADGAVDRFNKKYGL
K

Specific function: Unknown

COG id: COG0254

COG function: function code J; Ribosomal protein L31

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L31P family. Type B subfamily

Homologues:

Organism=Escherichia coli, GI2367109, Length=79, Percent_Identity=41.7721518987342, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL31B_LACPL (Q88Z52)

Other databases:

- EMBL:   AL935253
- RefSeq:   NP_784292.1
- ProteinModelPortal:   Q88Z52
- SMR:   Q88Z52
- GeneID:   1061502
- GenomeReviews:   AL935263_GR
- KEGG:   lpl:lp_0512
- NMPDR:   fig|220668.1.peg.426
- HOGENOM:   HBG610087
- OMA:   QFLTRST
- ProtClustDB:   CLSK2520032
- BioCyc:   LPLA220668:LP_0512-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00502
- InterPro:   IPR002150
- PRINTS:   PR01249
- TIGRFAMs:   TIGR00105

Pfam domain/function: PF01197 Ribosomal_L31

EC number: NA

Molecular weight: Translated: 9135; Mature: 9135

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS01143 RIBOSOMAL_L31

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKGIHPDYHLVVFQDSTTGFKFISGSTATSAETVEWEDGNTYPLIRVEITSDSHPFYTG
CCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEC
KQKFTKADGAVDRFNKKYGLK
CCEEECCCCCHHHCCHHCCCC
>Mature Secondary Structure
MQKGIHPDYHLVVFQDSTTGFKFISGSTATSAETVEWEDGNTYPLIRVEITSDSHPFYTG
CCCCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEC
KQKFTKADGAVDRFNKKYGLK
CCEEECCCCCHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566