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The map label for this gene is yybA [H]

Identifier: 28377234

GI number: 28377234

Start: 288326

End: 288748

Strand: Direct

Name: yybA [H]

Synonym: lp_0312

Alternate gene names: 28377234

Gene position: 288326-288748 (Clockwise)

Preceding gene: 28377232

Following gene: 28377235

Centisome position: 8.72

GC content: 43.5

Gene sequence:

>423_bases
ATGATACCAACATTAAGATTGATGGGCACGTTGTCGCGAATCGTCACGAACGAGGGTAATCAACGTTTTGCGAAATACGG
CCTCAATAACAATCAGTTTATTTATTTAATTCGAATTTGTGAGCAGCCTGGCCTATTTTTTAGTCAATTGGCTGACCAAA
TGAAGATGGATCGAACCACGAATTATCGCGCCGTTCAGAACTTAATAAAAAAAGGTTACGTGATTAAGCAGACACATCCA
GAGAATAAAAAGGTCCGGTGTTTGTACCCAACGAGCGCTGGGCAAGCGTTGTACCCGGAATTGCATGCTTATGAGCAGTG
GTGTGCAGACTTGGTTGGTGAGCAGTTAACGCCGGGCCAACAACAAGTTTTGTTTGAAAGTCTGTCGTTAGTCACGGCTA
ATGTCACCCAGCATATTGAGTAA

Upstream 100 bases:

>100_bases
TTCTGAGAATGTTTTAATCGACCACATGGTGATGCCTCCTTAGCATAGTGCTAAGTTTATCATCAAATGATTGCATATGC
AATAATAAAAAGGAGCTTCT

Downstream 100 bases:

>100_bases
GTTTAATCACTAAACTAGATTAATTGTGAACAATTAAAATGGCGTGGCGTTTTAGCTGAATTTTAGGCGTGAAGAGTGTA
CCATGTAGTTATCAAGTTAT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MIPTLRLMGTLSRIVTNEGNQRFAKYGLNNNQFIYLIRICEQPGLFFSQLADQMKMDRTTNYRAVQNLIKKGYVIKQTHP
ENKKVRCLYPTSAGQALYPELHAYEQWCADLVGEQLTPGQQQVLFESLSLVTANVTQHIE

Sequences:

>Translated_140_residues
MIPTLRLMGTLSRIVTNEGNQRFAKYGLNNNQFIYLIRICEQPGLFFSQLADQMKMDRTTNYRAVQNLIKKGYVIKQTHP
ENKKVRCLYPTSAGQALYPELHAYEQWCADLVGEQLTPGQQQVLFESLSLVTANVTQHIE
>Mature_140_residues
MIPTLRLMGTLSRIVTNEGNQRFAKYGLNNNQFIYLIRICEQPGLFFSQLADQMKMDRTTNYRAVQNLIKKGYVIKQTHP
ENKKVRCLYPTSAGQALYPELHAYEQWCADLVGEQLTPGQQQVLFESLSLVTANVTQHIE

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16081; Mature: 16081

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPTLRLMGTLSRIVTNEGNQRFAKYGLNNNQFIYLIRICEQPGLFFSQLADQMKMDRTT
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCC
NYRAVQNLIKKGYVIKQTHPENKKVRCLYPTSAGQALYPELHAYEQWCADLVGEQLTPGQ
CHHHHHHHHHCCEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
QQVLFESLSLVTANVTQHIE
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIPTLRLMGTLSRIVTNEGNQRFAKYGLNNNQFIYLIRICEQPGLFFSQLADQMKMDRTT
CCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCC
NYRAVQNLIKKGYVIKQTHPENKKVRCLYPTSAGQALYPELHAYEQWCADLVGEQLTPGQ
CHHHHHHHHHCCEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH
QQVLFESLSLVTANVTQHIE
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]