| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is 28377175
Identifier: 28377175
GI number: 28377175
Start: 223764
End: 224858
Strand: Direct
Name: 28377175
Synonym: lp_0249
Alternate gene names: NA
Gene position: 223764-224858 (Clockwise)
Preceding gene: 28377174
Following gene: 28377176
Centisome position: 6.76
GC content: 47.31
Gene sequence:
>1095_bases ATGACGAAGCGGACATTAGGAATTTCGTTGTACCCAGATCACAGTGTCTTTGAACGCGACCAGGCTTATTTAAAGGTCGC TGCCAGTTATGGGTTTACGCGACTGTTCGTCAGTATGTTGGAAGTACAAGACGGTAAAGAACGAGTTACGGAGAAATATC AGCGGATTATTCAGTCGGCGCATCAGCGGGGCTTCACCACGACCCTGGATGTGTCCCCGAATATTTTTGACCAACTAGGT GTGTCCTATCAGGATCTAAGCTATTTTGCGTCATTAGGAGCGGATGCAATCCGATTAGACGCCGGCTTTGATGGGCATCA AGAAGCCTGGTTATCGTATAACTCACAGGGACTTAATCTTGAACTGAACATGAGTAACGACGTTGAGTATTTGTCTAATA TTTTGTCATACAGTGCCAATCGACCGTTTCTTTATGGCTGCCATAACTTTTATCCGCAACGTGGGACGGGGTTGCCCTTT GATTTTTTCGTTGCGTGTTCACGCCGGTTCAAACGAGCTGGAATTGAAACGGCAGCGTTTGTCACGGCGCCAGGCGCAAC AATCGGTCCATGGGATATCAATGATGGCTTACCAACTTTAGAGATGCACCGTGACTGGCCGCTACAAGTACAAGTACAGC ACCTCTTTTCGACAGGATTAATTGATAGTGTGCTCATTGGTAACGCCTATGCGAAGCAGGAAGATTTGCAAAAGCTCGGC GCGCTTAACCGCTATCAAATCACGTTTGCGGTGACCCCTAGTGCGGACATCCAGCCCGTAGAACGCCAGATCTTACTCGA TAATTTGCACGAGCGGCGTGGCGATATCAACGATATAACGATTCGGTCAACAGAGGTTCGCAAACGCTATCATGATTTTA ATCGTGTCAACGATGACCGGCACACTTTTCAACGCGGTGATGTTGTGATTGGCAATGAGCAGTTCGGTAAATATCAGCAT GAATTACAAATTGTGCAACAGCCACACACAGATACTCGGAAGAATCTGGTGGCAACGATCAATCCTGACCAACTCGTATT ATTGGATGCAATCGGGCCGTGGACGAAATTTTCCTTTGAGGTCGCTCATGACTGA
Upstream 100 bases:
>100_bases TACCAGCTGTGATTGCCATAGTAGTGACGATTTATTTTGCAACAATTATTGCGAACCGCTACCTGCAAGTTTTTGAAGCA ATGGAACGGGGGAAACGCGG
Downstream 100 bases:
>100_bases GTTATATATTCATAATGGCCGAGATGTTAGCGGTGCGCCCGTGGCAGTTTTAATCACTGACGGAGTCATTGCGGAAGTGG GGACTGAACTGACTGTCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: Surface Protein
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MTKRTLGISLYPDHSVFERDQAYLKVAASYGFTRLFVSMLEVQDGKERVTEKYQRIIQSAHQRGFTTTLDVSPNIFDQLG VSYQDLSYFASLGADAIRLDAGFDGHQEAWLSYNSQGLNLELNMSNDVEYLSNILSYSANRPFLYGCHNFYPQRGTGLPF DFFVACSRRFKRAGIETAAFVTAPGATIGPWDINDGLPTLEMHRDWPLQVQVQHLFSTGLIDSVLIGNAYAKQEDLQKLG ALNRYQITFAVTPSADIQPVERQILLDNLHERRGDINDITIRSTEVRKRYHDFNRVNDDRHTFQRGDVVIGNEQFGKYQH ELQIVQQPHTDTRKNLVATINPDQLVLLDAIGPWTKFSFEVAHD
Sequences:
>Translated_364_residues MTKRTLGISLYPDHSVFERDQAYLKVAASYGFTRLFVSMLEVQDGKERVTEKYQRIIQSAHQRGFTTTLDVSPNIFDQLG VSYQDLSYFASLGADAIRLDAGFDGHQEAWLSYNSQGLNLELNMSNDVEYLSNILSYSANRPFLYGCHNFYPQRGTGLPF DFFVACSRRFKRAGIETAAFVTAPGATIGPWDINDGLPTLEMHRDWPLQVQVQHLFSTGLIDSVLIGNAYAKQEDLQKLG ALNRYQITFAVTPSADIQPVERQILLDNLHERRGDINDITIRSTEVRKRYHDFNRVNDDRHTFQRGDVVIGNEQFGKYQH ELQIVQQPHTDTRKNLVATINPDQLVLLDAIGPWTKFSFEVAHD >Mature_363_residues TKRTLGISLYPDHSVFERDQAYLKVAASYGFTRLFVSMLEVQDGKERVTEKYQRIIQSAHQRGFTTTLDVSPNIFDQLGV SYQDLSYFASLGADAIRLDAGFDGHQEAWLSYNSQGLNLELNMSNDVEYLSNILSYSANRPFLYGCHNFYPQRGTGLPFD FFVACSRRFKRAGIETAAFVTAPGATIGPWDINDGLPTLEMHRDWPLQVQVQHLFSTGLIDSVLIGNAYAKQEDLQKLGA LNRYQITFAVTPSADIQPVERQILLDNLHERRGDINDITIRSTEVRKRYHDFNRVNDDRHTFQRGDVVIGNEQFGKYQHE LQIVQQPHTDTRKNLVATINPDQLVLLDAIGPWTKFSFEVAHD
Specific function: Unknown
COG id: COG3589
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41487; Mature: 41356
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKRTLGISLYPDHSVFERDQAYLKVAASYGFTRLFVSMLEVQDGKERVTEKYQRIIQSA CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH HQRGFTTTLDVSPNIFDQLGVSYQDLSYFASLGADAIRLDAGFDGHQEAWLSYNSQGLNL HHCCCEEEEECCCCHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHEECCCCCEE ELNMSNDVEYLSNILSYSANRPFLYGCHNFYPQRGTGLPFDFFVACSRRFKRAGIETAAF EEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE VTAPGATIGPWDINDGLPTLEMHRDWPLQVQVQHLFSTGLIDSVLIGNAYAKQEDLQKLG EECCCCEECCCCCCCCCCCCEECCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC ALNRYQITFAVTPSADIQPVERQILLDNLHERRGDINDITIRSTEVRKRYHDFNRVNDDR CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCH HTFQRGDVVIGNEQFGKYQHELQIVQQPHTDTRKNLVATINPDQLVLLDAIGPWTKFSFE HHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCCEEEEE VAHD ECCC >Mature Secondary Structure TKRTLGISLYPDHSVFERDQAYLKVAASYGFTRLFVSMLEVQDGKERVTEKYQRIIQSA CCEEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH HQRGFTTTLDVSPNIFDQLGVSYQDLSYFASLGADAIRLDAGFDGHQEAWLSYNSQGLNL HHCCCEEEEECCCCHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHEECCCCCEE ELNMSNDVEYLSNILSYSANRPFLYGCHNFYPQRGTGLPFDFFVACSRRFKRAGIETAAF EEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE VTAPGATIGPWDINDGLPTLEMHRDWPLQVQVQHLFSTGLIDSVLIGNAYAKQEDLQKLG EECCCCEECCCCCCCCCCCCEECCCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC ALNRYQITFAVTPSADIQPVERQILLDNLHERRGDINDITIRSTEVRKRYHDFNRVNDDR CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCH HTFQRGDVVIGNEQFGKYQHELQIVQQPHTDTRKNLVATINPDQLVLLDAIGPWTKFSFE HHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCCCCEEEEE VAHD ECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA