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The map label for this gene is dhaS [H]

Identifier: 28377106

GI number: 28377106

Start: 142774

End: 143292

Strand: Direct

Name: dhaS [H]

Synonym: lp_0165

Alternate gene names: 28377106

Gene position: 142774-143292 (Clockwise)

Preceding gene: 28377104

Following gene: 28377108

Centisome position: 4.32

GC content: 41.04

Gene sequence:

>519_bases
ATGGCATACATTACAAAAAAGAAAATTGCACAAGCCTTTCATGACGTCGTCCTAGTGAGGGGCTTTAGCCGAACTTCCGT
GACGGCAATTATGAGCACCGCCGATTTTAGACGGCAAACATTTTATGATTATTTTCAAGATAAATATGAATTATTAACCT
GGTTTATTGATGACACCCTGACTGAAACGGTTGAACATAATCTGAATTATTTGCCTTGGATCGACATTATTAAACTAGTT
TGTTACGAGTTAGATGCGAATCGTCAATTTTATGCAGAATGTATTAACACGCAGCATGAAATTGACGTGACGGCACTTGT
CGGTAACCACTTAGCCACGTTATTGACTGAACTAACGCACGCCAATACAACAGAAACGGCGGCCCTAATCTGGTTGCTGT
GCTTGGGAATCGCACAATCGTTAACGCATAATATCGTTGCGAATCATCCTGAAGATTATGAGGTGCTTTCTCAGCACGCT
ATTGCGGCCATCGAAATGACACTCGAAATTTTGAACTAG

Upstream 100 bases:

>100_bases
GTTTCTCCTAGCGATCAATTAATCCGGAATATGGCTCCCGTTGGACATGGGTTGCAGTTATCGCTACAATGTTGATAAAA
GGCAGTATGGAGGCGTTTGA

Downstream 100 bases:

>100_bases
TTAGGCCAAGCAGCAGTTTTGACGGGTCGGTTTAGAGCAGTTAACCAGTCAGGGTCGGCTAGGCTGAGTAAGGTTAATGA
CAACCCATGCATCCCGTTAG

Product: transcription regulator (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MAYITKKKIAQAFHDVVLVRGFSRTSVTAIMSTADFRRQTFYDYFQDKYELLTWFIDDTLTETVEHNLNYLPWIDIIKLV
CYELDANRQFYAECINTQHEIDVTALVGNHLATLLTELTHANTTETAALIWLLCLGIAQSLTHNIVANHPEDYEVLSQHA
IAAIEMTLEILN

Sequences:

>Translated_172_residues
MAYITKKKIAQAFHDVVLVRGFSRTSVTAIMSTADFRRQTFYDYFQDKYELLTWFIDDTLTETVEHNLNYLPWIDIIKLV
CYELDANRQFYAECINTQHEIDVTALVGNHLATLLTELTHANTTETAALIWLLCLGIAQSLTHNIVANHPEDYEVLSQHA
IAAIEMTLEILN
>Mature_171_residues
AYITKKKIAQAFHDVVLVRGFSRTSVTAIMSTADFRRQTFYDYFQDKYELLTWFIDDTLTETVEHNLNYLPWIDIIKLVC
YELDANRQFYAECINTQHEIDVTALVGNHLATLLTELTHANTTETAALIWLLCLGIAQSLTHNIVANHPEDYEVLSQHAI
AAIEMTLEILN

Specific function: In complex with dhaQ, upon activation by dihydroxyacetone, activates transcription of the dhaKLM operon. Binds the inverted repeat sequence 5'-GGACACATN(6)ATTTGTCC-3' located upstream of and partially overlapping with the -35 promoter sequence of the dhaK

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR012738
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 19754; Mature: 19623

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYITKKKIAQAFHDVVLVRGFSRTSVTAIMSTADFRRQTFYDYFQDKYELLTWFIDDTL
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TETVEHNLNYLPWIDIIKLVCYELDANRQFYAECINTQHEIDVTALVGNHLATLLTELTH
HHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
ANTTETAALIWLLCLGIAQSLTHNIVANHPEDYEVLSQHAIAAIEMTLEILN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AYITKKKIAQAFHDVVLVRGFSRTSVTAIMSTADFRRQTFYDYFQDKYELLTWFIDDTL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TETVEHNLNYLPWIDIIKLVCYELDANRQFYAECINTQHEIDVTALVGNHLATLLTELTH
HHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
ANTTETAALIWLLCLGIAQSLTHNIVANHPEDYEVLSQHAIAAIEMTLEILN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]