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The map label for this gene is yvdE [H]

Identifier: 28377066

GI number: 28377066

Start: 102998

End: 103738

Strand: Direct

Name: yvdE [H]

Synonym: lp_0117

Alternate gene names: 28377066

Gene position: 102998-103738 (Clockwise)

Preceding gene: 28377065

Following gene: 28377067

Centisome position: 3.11

GC content: 51.28

Gene sequence:

>741_bases
ATGGTTAAACCGATAATTGGAATCGCACCAGGCGTTGTGACAGTGAACAGCCAGATGTTCCCGGGGCGGGTCCGTGATTA
TGTGAATCGTGATTATTTGAAATCAGTAACGGATAATGGCGGTGTGCCATTGGTATTACCGGTAACGACAGACGCAACGA
CGATTGAACGGTACGTTGGAATGATCGATGGTCTACTACTTTGTGGTGGTGCAGATGTGGCCCCATTGACGTATGGGGAG
GAACCCCAGCCTAAATTGGGTGGGGTAGATCCGGAACGGGATCAGTATGAAATTGCGCTGATTCGTGCCACCCACGCCGT
TGGTAAACCGGTGCTCGGTATCTGTCGGGGCTTACAAATCTTAAACGTGTGCTATGGTGGCAATCTTTATCAGGATATGA
GTGAACTGCCAGCTGGTCAGGGTACCTTAAAGCACATGCAAGGACAATTGGCCGCTTACGGCATGCATCACGTGAAGGTC
GTACCTGGTACGACCTTAGCTGAATATTTAGGCACCACTAGTGACGCAATCGCGATCAATTCATTTCATCATCAGGCCGT
GAAACAGGTGGCAACGGGCTTTCAGGTGGTGGCCCAAAGTGCGGATCAGGTTGTTGAAGCAATTGAGGCGACAGCTGGTG
GTCTACAGTTGGGTGTCCAGTGGCATCCGGAAATGATGCAACAGGTAAACTCCATGCAGGCGCGGTTATTTGCGGCGTTT
GTGCGGGCTTGTGTGGCGTAG

Upstream 100 bases:

>100_bases
TCGCGAGCTTAGTCATTGACAATTAGATGTAAAAAGTAAATGATAATCCCATTGGTAATGCGCATGTTACCGTGGGATTT
TTTTGAGAGAGGGCGACAGA

Downstream 100 bases:

>100_bases
ATAGCATTGACTAGCAAATTAATAAAATAGGCGTGGTTATTCTGAATTGTAGGATAACCACGTTTTTAATGTGCAGCCGC
AAAACTAATGAATGTTTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MVKPIIGIAPGVVTVNSQMFPGRVRDYVNRDYLKSVTDNGGVPLVLPVTTDATTIERYVGMIDGLLLCGGADVAPLTYGE
EPQPKLGGVDPERDQYEIALIRATHAVGKPVLGICRGLQILNVCYGGNLYQDMSELPAGQGTLKHMQGQLAAYGMHHVKV
VPGTTLAEYLGTTSDAIAINSFHHQAVKQVATGFQVVAQSADQVVEAIEATAGGLQLGVQWHPEMMQQVNSMQARLFAAF
VRACVA

Sequences:

>Translated_246_residues
MVKPIIGIAPGVVTVNSQMFPGRVRDYVNRDYLKSVTDNGGVPLVLPVTTDATTIERYVGMIDGLLLCGGADVAPLTYGE
EPQPKLGGVDPERDQYEIALIRATHAVGKPVLGICRGLQILNVCYGGNLYQDMSELPAGQGTLKHMQGQLAAYGMHHVKV
VPGTTLAEYLGTTSDAIAINSFHHQAVKQVATGFQVVAQSADQVVEAIEATAGGLQLGVQWHPEMMQQVNSMQARLFAAF
VRACVA
>Mature_246_residues
MVKPIIGIAPGVVTVNSQMFPGRVRDYVNRDYLKSVTDNGGVPLVLPVTTDATTIERYVGMIDGLLLCGGADVAPLTYGE
EPQPKLGGVDPERDQYEIALIRATHAVGKPVLGICRGLQILNVCYGGNLYQDMSELPAGQGTLKHMQGQLAAYGMHHVKV
VPGTTLAEYLGTTSDAIAINSFHHQAVKQVATGFQVVAQSADQVVEAIEATAGGLQLGVQWHPEMMQQVNSMQARLFAAF
VRACVA

Specific function: Unknown

COG id: COG2071

COG function: function code R; Predicted glutamine amidotransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081871, Length=254, Percent_Identity=31.8897637795276, Blast_Score=110, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017926
- InterPro:   IPR011697 [H]

Pfam domain/function: PF07722 Peptidase_C26 [H]

EC number: NA

Molecular weight: Translated: 26243; Mature: 26243

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKPIIGIAPGVVTVNSQMFPGRVRDYVNRDYLKSVTDNGGVPLVLPVTTDATTIERYVG
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH
MIDGLLLCGGADVAPLTYGEEPQPKLGGVDPERDQYEIALIRATHAVGKPVLGICRGLQI
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHH
LNVCYGGNLYQDMSELPAGQGTLKHMQGQLAAYGMHHVKVVPGTTLAEYLGTTSDAIAIN
HHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCCCEEHH
SFHHQAVKQVATGFQVVAQSADQVVEAIEATAGGLQLGVQWHPEMMQQVNSMQARLFAAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECHHHHHHHHHHHHHHHHHH
VRACVA
HHHHCC
>Mature Secondary Structure
MVKPIIGIAPGVVTVNSQMFPGRVRDYVNRDYLKSVTDNGGVPLVLPVTTDATTIERYVG
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH
MIDGLLLCGGADVAPLTYGEEPQPKLGGVDPERDQYEIALIRATHAVGKPVLGICRGLQI
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHCCHHHHHHHHHHH
LNVCYGGNLYQDMSELPAGQGTLKHMQGQLAAYGMHHVKVVPGTTLAEYLGTTSDAIAIN
HHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCCCEEHH
SFHHQAVKQVATGFQVVAQSADQVVEAIEATAGGLQLGVQWHPEMMQQVNSMQARLFAAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECHHHHHHHHHHHHHHHHHH
VRACVA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]