| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is dnaC [H]
Identifier: 28376986
GI number: 28376986
Start: 13747
End: 15171
Strand: Direct
Name: dnaC [H]
Synonym: lp_0014
Alternate gene names: 28376986
Gene position: 13747-15171 (Clockwise)
Preceding gene: 28376985
Following gene: 28376987
Centisome position: 0.42
GC content: 47.72
Gene sequence:
>1425_bases ATGAACAACGATGTGCTGGATCAAACCCCACCACAAAATATTGAAGCTGAAAAGGCAGTCTTGGGGGCTATTTTCTTAAA CAGTGACGCCCTCGTGGAAGCGATGGAGTTTGTCGAAGCGCAAGATTTCTATCGGCGCGCACATCAGATCATTTTTGCCA GCATGGTGACTTTAAATGACCGTGACGAGGCTATTGATGCGGTGACCGTTAGTGATTTATTAACGGCCCAAAATCAATTG GATGATGTTGGTGGGATGAGCTACATTGCTGAATTAGCTGGGTCCGTACCGACTGCGGCTAACGCTGGCTACTATGCTAA GATTGTGGCGCAAAAGGCGACGGTGCGGCGGTTGATCAAGACGGCCACGGAGATTACGCAAAAGGCCTATACGGAAAATG ATGACGTGACCACGTTATTAGATGACGCGGAACGCGACATTATGAACGTGTCTGAACAGCGTAATCAGAGTGGGTTTAAG TCGATTTCAGATGTGTTGAACGCGTCGATTGAAGAAATTGACCGCTTGTATCAAAATGATGATGACATTACCGGTTTACC GACTGGTTTTGCGGAGCTGGATAAAATGACCGCCGGCTTACAACCGGATAATCTGATTATTTTGGCTGCCCGGCCAGCCG TTGGTAAGACAGCCTTTGTCCTGAATATTGCCCAAAATGTGGCGACTAAAACGGATACGACAGTGGCCATTTTCAGTTTG GAAATGGGTGCCGAATCCTTAGTCAACCGGATGCTGTGTGCAGAAGGTAGTATTGACGCTGGGCATTTACGGACGGGGCA ACTGAACGAAGAAGAGTGGGAACACTTGGTGGTTGCCATGGGGAGTTTGTCTAAAGCTAGTATTTTTATTGACGATACCC CCGGAATCAAGATGTCAGAAATCCGGGCCAAAAGTCGCCGCTTAGCGAAAGAGCAAGGTAACCTCGGCTTGATTGTGGTC GATTATTTGCAACTGATCGAAGGTAGTAACACAGAAAGTCGGCAACAGGAAGTTTCCGAAATTTCGCGGCAAATGAAGAA ACTGGCTAAGGAACTAGGTGTTCCAGTCATTGCCTTATCACAGCTATCTCGTGGTGTTGAACAGCGTCAAGATAAGCGGC CAGTGCTTTCCGATATTCGTGAATCGGGTTCAATTGAACAAGATGCTGACATCGTTGCCTTCCTATACCGGGAAGATTAT TATGATCGCGAAGGCGGCGACGATGATGATGGCGGTAATTTTGGTGGCGGTGGTGACTTTAATGGCGGCGATCCGCGGGA CGAAGATGCTTCTGAGGATGTTGGTGAAGTTGAAGTGATTATCGAAAAGAACCGTGCTGGGGCGCGGGGAACGGTCAAAC TATTATTTGTGAAACCATTTAATAAGTTCTCCTCAGTCTCTTATGCGCAGGATCCCCAAGCTTAA
Upstream 100 bases:
>100_bases TCGGGTATTAGGTTACACAAACGTGCCCGTTAAGTTACATCCAGAAGTAACGGCGAAAATTCGCGTGCACGTTGTCGAAA AGTAAAAGGACGGATCACAA
Downstream 100 bases:
>100_bases TTGCAGTCGATCAATAAATTTGTTATCAAATTCCTCTTAAACTAATTAAGAGGAATTTTTTGTTTATCACGTGCCGAGGC TACTTGTTTTCCGCCAATTG
Product: replicative DNA helicase DnaC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MNNDVLDQTPPQNIEAEKAVLGAIFLNSDALVEAMEFVEAQDFYRRAHQIIFASMVTLNDRDEAIDAVTVSDLLTAQNQL DDVGGMSYIAELAGSVPTAANAGYYAKIVAQKATVRRLIKTATEITQKAYTENDDVTTLLDDAERDIMNVSEQRNQSGFK SISDVLNASIEEIDRLYQNDDDITGLPTGFAELDKMTAGLQPDNLIILAARPAVGKTAFVLNIAQNVATKTDTTVAIFSL EMGAESLVNRMLCAEGSIDAGHLRTGQLNEEEWEHLVVAMGSLSKASIFIDDTPGIKMSEIRAKSRRLAKEQGNLGLIVV DYLQLIEGSNTESRQQEVSEISRQMKKLAKELGVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYREDY YDREGGDDDDGGNFGGGGDFNGGDPRDEDASEDVGEVEVIIEKNRAGARGTVKLLFVKPFNKFSSVSYAQDPQA
Sequences:
>Translated_474_residues MNNDVLDQTPPQNIEAEKAVLGAIFLNSDALVEAMEFVEAQDFYRRAHQIIFASMVTLNDRDEAIDAVTVSDLLTAQNQL DDVGGMSYIAELAGSVPTAANAGYYAKIVAQKATVRRLIKTATEITQKAYTENDDVTTLLDDAERDIMNVSEQRNQSGFK SISDVLNASIEEIDRLYQNDDDITGLPTGFAELDKMTAGLQPDNLIILAARPAVGKTAFVLNIAQNVATKTDTTVAIFSL EMGAESLVNRMLCAEGSIDAGHLRTGQLNEEEWEHLVVAMGSLSKASIFIDDTPGIKMSEIRAKSRRLAKEQGNLGLIVV DYLQLIEGSNTESRQQEVSEISRQMKKLAKELGVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYREDY YDREGGDDDDGGNFGGGGDFNGGDPRDEDASEDVGEVEVIIEKNRAGARGTVKLLFVKPFNKFSSVSYAQDPQA >Mature_474_residues MNNDVLDQTPPQNIEAEKAVLGAIFLNSDALVEAMEFVEAQDFYRRAHQIIFASMVTLNDRDEAIDAVTVSDLLTAQNQL DDVGGMSYIAELAGSVPTAANAGYYAKIVAQKATVRRLIKTATEITQKAYTENDDVTTLLDDAERDIMNVSEQRNQSGFK SISDVLNASIEEIDRLYQNDDDITGLPTGFAELDKMTAGLQPDNLIILAARPAVGKTAFVLNIAQNVATKTDTTVAIFSL EMGAESLVNRMLCAEGSIDAGHLRTGQLNEEEWEHLVVAMGSLSKASIFIDDTPGIKMSEIRAKSRRLAKEQGNLGLIVV DYLQLIEGSNTESRQQEVSEISRQMKKLAKELGVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYREDY YDREGGDDDDGGNFGGGGDFNGGDPRDEDASEDVGEVEVIIEKNRAGARGTVKLLFVKPFNKFSSVSYAQDPQA
Specific function: Participates In Initiation And Elongation During Chromosome Replication; It Exhibits DNA-Dependent ATPase Activity And Contains Distinct Active Sites For ATP Binding, DNA Binding, And Interaction With DNAc Protein, Primase, And Other Prepriming Proteins.
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=469, Percent_Identity=42.6439232409382, Blast_Score=370, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007692 - InterPro: IPR007694 - InterPro: IPR007693 - InterPro: IPR016136 [H]
Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 51761; Mature: 51761
Theoretical pI: Translated: 4.19; Mature: 4.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNDVLDQTPPQNIEAEKAVLGAIFLNSDALVEAMEFVEAQDFYRRAHQIIFASMVTLND CCCCCCCCCCCCCCCHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC RDEAIDAVTVSDLLTAQNQLDDVGGMSYIAELAGSVPTAANAGYYAKIVAQKATVRRLIK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH TATEITQKAYTENDDVTTLLDDAERDIMNVSEQRNQSGFKSISDVLNASIEEIDRLYQND HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC DDITGLPTGFAELDKMTAGLQPDNLIILAARPAVGKTAFVLNIAQNVATKTDTTVAIFSL CCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEE EMGAESLVNRMLCAEGSIDAGHLRTGQLNEEEWEHLVVAMGSLSKASIFIDDTPGIKMSE CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH IRAKSRRLAKEQGNLGLIVVDYLQLIEGSNTESRQQEVSEISRQMKKLAKELGVPVIALS HHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYREDYYDREGGDDDDGGNFGGGGDF HHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC NGGDPRDEDASEDVGEVEVIIEKNRAGARGTVKLLFVKPFNKFSSVSYAQDPQA CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHCCCCCCCCCCC >Mature Secondary Structure MNNDVLDQTPPQNIEAEKAVLGAIFLNSDALVEAMEFVEAQDFYRRAHQIIFASMVTLND CCCCCCCCCCCCCCCHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC RDEAIDAVTVSDLLTAQNQLDDVGGMSYIAELAGSVPTAANAGYYAKIVAQKATVRRLIK CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH TATEITQKAYTENDDVTTLLDDAERDIMNVSEQRNQSGFKSISDVLNASIEEIDRLYQND HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC DDITGLPTGFAELDKMTAGLQPDNLIILAARPAVGKTAFVLNIAQNVATKTDTTVAIFSL CCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEE EMGAESLVNRMLCAEGSIDAGHLRTGQLNEEEWEHLVVAMGSLSKASIFIDDTPGIKMSE CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH IRAKSRRLAKEQGNLGLIVVDYLQLIEGSNTESRQQEVSEISRQMKKLAKELGVPVIALS HHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYREDYYDREGGDDDDGGNFGGGGDF HHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC NGGDPRDEDASEDVGEVEVIIEKNRAGARGTVKLLFVKPFNKFSSVSYAQDPQA CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 1312531 [H]