| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is yxeH [H]
Identifier: 28212036
GI number: 28212036
Start: 2592463
End: 2593425
Strand: Direct
Name: yxeH [H]
Synonym: CTC02452
Alternate gene names: 28212036
Gene position: 2592463-2593425 (Clockwise)
Preceding gene: 28212034
Following gene: 28212042
Centisome position: 92.61
GC content: 26.79
Gene sequence:
>963_bases TTGTATACAACAATGATTTTATCTTTTAAATTTTTAACTGTCAATTATTTTGCAAAGTTTTATAGTAAATGCCAATTGTT TATAATGTATTTCTTTAAACTAAATGCTATACTAAATACATTAGATTTAACTAAAGAAAGGCGGAACCAATATATGTACA AATTAGTAGCTATAGATATGGATGGAACCTTATTAGATGATAGCAAAACTATACCTAATGAAAATATAAGAGCCATAAAA GAGGCCTCAAACAAAGGTATAAAAATTGCATTAGCCACTGGTAGGCCTTTAACAGGTATAAAAAATTATTTAAATGTCTT AGGATTAAATTCACCAGATAACTTTTCCATAATCTATAATGGAGCTTTAATACAAAATAATACTAATAAAAAAATAATTT CTCAGTGCCTACTAAATTACGATGATTTGATGTATTTTCACAATCTAAGTAGAAAATTTCATATTCATATGAATGTGTTT ACTAAGGATTCTTGTATAACTTCTAAATTAGGTAAATATACCACCTTAGAAGCAAAATGGAGTAACATAGATGTAAAAAT AGTGGATTTTAATAATTTAGATAAAAATATAGAAATTACTAAGGTTATTTTTGCCGATGAACCAGAACTAATATCAAAAA TAATGGATAATTTAGATGATGATGTATACTCAAAGTATGCTATGGCTAGAAGTGCACCTTACTTTCTTGAATTTTTTAAT AAAGAAATTAATAAAGGTATTGCAGTAAAAAAGTATGCTGATAGCTTAAATATACATAAAGAGGAAATCATTTGTATTGG CGATGCAGGCAATGACATTGAAATGATTAAGTTTGCTGGACTAGGTATTGCTATGGAAAATGCTTTTCCAGAAATAAAGA ATGTAGCAAACTACATAACCCTATCAAATGAAAATGCAGGAGTAGCTCACGCAATAGATAAATTTATACTTTCTAAGTTT TAA
Upstream 100 bases:
>100_bases GTGTGGTTTTACCCGCATCTGGGTGAGATATTATTGCAAATGTTCTTCTTTTTTCTATTTCCTTTTCAAGACCTTTCACT AAAACCTCTCCTCTTCATTT
Downstream 100 bases:
>100_bases TCTATTATATGAACTATCCTATTTATAAAGAGTAAACCCTTTGGAATATCTAAGGATTTACTCTTTAATATTATTTATCT AATACAAATCCTATCTTTCT
Product: HAD superfamily hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MYTTMILSFKFLTVNYFAKFYSKCQLFIMYFFKLNAILNTLDLTKERRNQYMYKLVAIDMDGTLLDDSKTIPNENIRAIK EASNKGIKIALATGRPLTGIKNYLNVLGLNSPDNFSIIYNGALIQNNTNKKIISQCLLNYDDLMYFHNLSRKFHIHMNVF TKDSCITSKLGKYTTLEAKWSNIDVKIVDFNNLDKNIEITKVIFADEPELISKIMDNLDDDVYSKYAMARSAPYFLEFFN KEINKGIAVKKYADSLNIHKEEIICIGDAGNDIEMIKFAGLGIAMENAFPEIKNVANYITLSNENAGVAHAIDKFILSKF
Sequences:
>Translated_320_residues MYTTMILSFKFLTVNYFAKFYSKCQLFIMYFFKLNAILNTLDLTKERRNQYMYKLVAIDMDGTLLDDSKTIPNENIRAIK EASNKGIKIALATGRPLTGIKNYLNVLGLNSPDNFSIIYNGALIQNNTNKKIISQCLLNYDDLMYFHNLSRKFHIHMNVF TKDSCITSKLGKYTTLEAKWSNIDVKIVDFNNLDKNIEITKVIFADEPELISKIMDNLDDDVYSKYAMARSAPYFLEFFN KEINKGIAVKKYADSLNIHKEEIICIGDAGNDIEMIKFAGLGIAMENAFPEIKNVANYITLSNENAGVAHAIDKFILSKF >Mature_320_residues MYTTMILSFKFLTVNYFAKFYSKCQLFIMYFFKLNAILNTLDLTKERRNQYMYKLVAIDMDGTLLDDSKTIPNENIRAIK EASNKGIKIALATGRPLTGIKNYLNVLGLNSPDNFSIIYNGALIQNNTNKKIISQCLLNYDDLMYFHNLSRKFHIHMNVF TKDSCITSKLGKYTTLEAKWSNIDVKIVDFNNLDKNIEITKVIFADEPELISKIMDNLDDDVYSKYAMARSAPYFLEFFN KEINKGIAVKKYADSLNIHKEEIICIGDAGNDIEMIKFAGLGIAMENAFPEIKNVANYITLSNENAGVAHAIDKFILSKF
Specific function: Unknown
COG id: COG0561
COG function: function code R; Predicted hydrolases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]
Homologues:
Organism=Escherichia coli, GI2367265, Length=266, Percent_Identity=40.9774436090226, Blast_Score=218, Evalue=5e-58, Organism=Escherichia coli, GI87081741, Length=275, Percent_Identity=24, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI87081790, Length=273, Percent_Identity=24.9084249084249, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787043, Length=268, Percent_Identity=24.6268656716418, Blast_Score=64, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006379 - InterPro: IPR000150 - InterPro: IPR006380 [H]
Pfam domain/function: PF00702 Hydrolase; PF05116 S6PP [H]
EC number: NA
Molecular weight: Translated: 36586; Mature: 36586
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: PS01229 COF_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYTTMILSFKFLTVNYFAKFYSKCQLFIMYFFKLNAILNTLDLTKERRNQYMYKLVAIDM CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEC DGTLLDDSKTIPNENIRAIKEASNKGIKIALATGRPLTGIKNYLNVLGLNSPDNFSIIYN CCEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEE GALIQNNTNKKIISQCLLNYDDLMYFHNLSRKFHIHMNVFTKDSCITSKLGKYTTLEAKW CEEEECCCCHHHHHHHHHCHHHHHHHHCCCEEEEEEEEEEECCHHHHHHCCCEEEEEEEE SNIDVKIVDFNNLDKNIEITKVIFADEPELISKIMDNLDDDVYSKYAMARSAPYFLEFFN CCEEEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH KEINKGIAVKKYADSLNIHKEEIICIGDAGNDIEMIKFAGLGIAMENAFPEIKNVANYIT HHHHCCEEEEEHHCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEHHCCHHHHHHHHEEE LSNENAGVAHAIDKFILSKF ECCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MYTTMILSFKFLTVNYFAKFYSKCQLFIMYFFKLNAILNTLDLTKERRNQYMYKLVAIDM CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEEC DGTLLDDSKTIPNENIRAIKEASNKGIKIALATGRPLTGIKNYLNVLGLNSPDNFSIIYN CCEEECCCCCCCCCHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEE GALIQNNTNKKIISQCLLNYDDLMYFHNLSRKFHIHMNVFTKDSCITSKLGKYTTLEAKW CEEEECCCCHHHHHHHHHCHHHHHHHHCCCEEEEEEEEEEECCHHHHHHCCCEEEEEEEE SNIDVKIVDFNNLDKNIEITKVIFADEPELISKIMDNLDDDVYSKYAMARSAPYFLEFFN CCEEEEEEECCCCCCCEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH KEINKGIAVKKYADSLNIHKEEIICIGDAGNDIEMIKFAGLGIAMENAFPEIKNVANYIT HHHHCCEEEEEHHCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEHHCCHHHHHHHHEEE LSNENAGVAHAIDKFILSKF ECCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]