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The map label for this gene is ydiC [H]

Identifier: 28212029

GI number: 28212029

Start: 2583250

End: 2583963

Strand: Direct

Name: ydiC [H]

Synonym: CTC02444

Alternate gene names: 28212029

Gene position: 2583250-2583963 (Clockwise)

Preceding gene: 28212028

Following gene: 28212030

Centisome position: 92.28

GC content: 28.71

Gene sequence:

>714_bases
ATGAAAATATTAAGTGTGGATTCTTCCACAGAATCAGCCACTTGTGCTGTTTTAGATGATGATAAATTACTAGGTGAAAT
TACTTTTAACTACAAAAAACAACATTCAGTAATTTTAATGAATATAATAGATTTTTTATTAAATAATTTAAGTTTAACTA
TAAAGGATATAGATGGATTTGTAATTTCTAAAGGTCCAGGATCTTTTACAGGTCTTAGAATAGGTGCTGCTACAATAAAA
GGCATGAGCCAAGGCTCTAAAAAGCCTTTTGTAGCTGTTTCTTCACTAGATGCATTAGCTAATAATATGGCATATACAGA
AGGAATAATTTGCCCTATATTAGATGCACTTAGAAATAATGTTTATACCGCTTTGTATGAATATAAGGATGATAATCTTC
AAATGATTACTGATATTTCTATTCAATCTATAGATGAATTAACGGAAAATTTATCTAAATATGATTGCAATATTACTTTC
ATAGGAGATGCACTACCTAAATTAAAAGATATTATTAAAAAGGATTTACCTAATTCCCACTTTGCACCTCCTTCTTTAAA
TGTAGCAAAGGCTTCTTCCTTAGGAGAATTAGGATTGAAATTATTAAAGTCAGGCTATACTGATAATATATACACTTTTT
CCCCTATATATATTAGAAAGTCTCAAGCTGAAAGGGAATATGAGGAAAAGGAACGTTTAGAAAAAAATGAATAA

Upstream 100 bases:

>100_bases
ACATATTAGTAGAGAAAAATTCTAAAAATGATTTTAATTCTAGAAAAATAACAATCACCCCTTACGGCAAAAGATATAAT
TACATAAAGGAGATAAGTCT

Downstream 100 bases:

>100_bases
TTTAAATGATATATTATTATGTAAGGCTACAAAAGAACATATTGAAGAAATATTTAACATAAACAAATTATCTTTTTTAG
CTCCTTGGAGTATTCAGTCT

Product: O-sialoglycoprotein endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKILSVDSSTESATCAVLDDDKLLGEITFNYKKQHSVILMNIIDFLLNNLSLTIKDIDGFVISKGPGSFTGLRIGAATIK
GMSQGSKKPFVAVSSLDALANNMAYTEGIICPILDALRNNVYTALYEYKDDNLQMITDISIQSIDELTENLSKYDCNITF
IGDALPKLKDIIKKDLPNSHFAPPSLNVAKASSLGELGLKLLKSGYTDNIYTFSPIYIRKSQAEREYEEKERLEKNE

Sequences:

>Translated_237_residues
MKILSVDSSTESATCAVLDDDKLLGEITFNYKKQHSVILMNIIDFLLNNLSLTIKDIDGFVISKGPGSFTGLRIGAATIK
GMSQGSKKPFVAVSSLDALANNMAYTEGIICPILDALRNNVYTALYEYKDDNLQMITDISIQSIDELTENLSKYDCNITF
IGDALPKLKDIIKKDLPNSHFAPPSLNVAKASSLGELGLKLLKSGYTDNIYTFSPIYIRKSQAEREYEEKERLEKNE
>Mature_237_residues
MKILSVDSSTESATCAVLDDDKLLGEITFNYKKQHSVILMNIIDFLLNNLSLTIKDIDGFVISKGPGSFTGLRIGAATIK
GMSQGSKKPFVAVSSLDALANNMAYTEGIICPILDALRNNVYTALYEYKDDNLQMITDISIQSIDELTENLSKYDCNITF
IGDALPKLKDIIKKDLPNSHFAPPSLNVAKASSLGELGLKLLKSGYTDNIYTFSPIYIRKSQAEREYEEKERLEKNE

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=240, Percent_Identity=21.6666666666667, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 26263; Mature: 26263

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILSVDSSTESATCAVLDDDKLLGEITFNYKKQHSVILMNIIDFLLNNLSLTIKDIDGF
CEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCE
VISKGPGSFTGLRIGAATIKGMSQGSKKPFVAVSSLDALANNMAYTEGIICPILDALRNN
EEECCCCCCCEEEEHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCC
VYTALYEYKDDNLQMITDISIQSIDELTENLSKYDCNITFIGDALPKLKDIIKKDLPNSH
CEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCC
FAPPSLNVAKASSLGELGLKLLKSGYTDNIYTFSPIYIRKSQAEREYEEKERLEKNE
CCCCCCCHHHHCCHHHHHHHHHHCCCCCCEEEECEEEEECCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKILSVDSSTESATCAVLDDDKLLGEITFNYKKQHSVILMNIIDFLLNNLSLTIKDIDGF
CEEEECCCCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCE
VISKGPGSFTGLRIGAATIKGMSQGSKKPFVAVSSLDALANNMAYTEGIICPILDALRNN
EEECCCCCCCEEEEHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCC
VYTALYEYKDDNLQMITDISIQSIDELTENLSKYDCNITFIGDALPKLKDIIKKDLPNSH
CEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCC
FAPPSLNVAKASSLGELGLKLLKSGYTDNIYTFSPIYIRKSQAEREYEEKERLEKNE
CCCCCCCHHHHCCHHHHHHHHHHCCCCCCEEEECEEEEECCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]