Click here to switch to the map view.

The map label for this gene is ydiB [H]

Identifier: 28212028

GI number: 28212028

Start: 2582762

End: 2583253

Strand: Direct

Name: ydiB [H]

Synonym: CTC02443

Alternate gene names: 28212028

Gene position: 2582762-2583253 (Clockwise)

Preceding gene: 28212024

Following gene: 28212029

Centisome position: 92.27

GC content: 28.86

Gene sequence:

>492_bases
ATGATAATATATAAAATAAAGGCGGGAACTCACATGATTTTCACAGTAAACAGTGTAGATGAAACCATTAGTATTGGTGA
ACAAATAGGCAAACTAGCCCATGCTGGTGATATAATATGTCTTGAAGGAGATTTAGGTACTGGTAAAACCCATTTAACTA
AAGGAATTGCTAAAGGTTTAGGCATACATAACACTATAACAAGTCCTACTTTCAATATTGTCAATGAATATGAAGGACGA
CTGAAATTTTATCATTTTGATGTATATAGAGTAAATGATCCTGATGAAATATATGCTATAGGTTTTGATGAATATATATT
TAGTGATGCAGTTACTGTAATTGAATGGTCTAATTATATTAAAGAACTTATTCCAGAAGAATATATGAACATATTAGTAG
AGAAAAATTCTAAAAATGATTTTAATTCTAGAAAAATAACAATCACCCCTTACGGCAAAAGATATAATTACATAAAGGAG
ATAAGTCTATGA

Upstream 100 bases:

>100_bases
ATAATATATTATTCTATTGCAAACTAATAATTATTTAATATTTAATTGACCATTTACTTATGATAGAATATACTTGTAAA
AAGTAAAAAATAAGGTACAA

Downstream 100 bases:

>100_bases
AAATATTAAGTGTGGATTCTTCCACAGAATCAGCCACTTGTGCTGTTTTAGATGATGATAAATTACTAGGTGAAATTACT
TTTAACTACAAAAAACAACA

Product: ATP/GTP hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MIIYKIKAGTHMIFTVNSVDETISIGEQIGKLAHAGDIICLEGDLGTGKTHLTKGIAKGLGIHNTITSPTFNIVNEYEGR
LKFYHFDVYRVNDPDEIYAIGFDEYIFSDAVTVIEWSNYIKELIPEEYMNILVEKNSKNDFNSRKITITPYGKRYNYIKE
ISL

Sequences:

>Translated_163_residues
MIIYKIKAGTHMIFTVNSVDETISIGEQIGKLAHAGDIICLEGDLGTGKTHLTKGIAKGLGIHNTITSPTFNIVNEYEGR
LKFYHFDVYRVNDPDEIYAIGFDEYIFSDAVTVIEWSNYIKELIPEEYMNILVEKNSKNDFNSRKITITPYGKRYNYIKE
ISL
>Mature_163_residues
MIIYKIKAGTHMIFTVNSVDETISIGEQIGKLAHAGDIICLEGDLGTGKTHLTKGIAKGLGIHNTITSPTFNIVNEYEGR
LKFYHFDVYRVNDPDEIYAIGFDEYIFSDAVTVIEWSNYIKELIPEEYMNILVEKNSKNDFNSRKITITPYGKRYNYIKE
ISL

Specific function: Displays ATPase activity, which is modulated by the oligomeric status of the protein. The physiological partner is unknown [H]

COG id: COG0802

COG function: function code R; Predicted ATPase or kinase

Gene ontology:

Cell location: Cytoplasm. Note=Localized predominantly at the cell poles and at the periphery of the bacterium [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0079 family [H]

Homologues:

Organism=Escherichia coli, GI1790610, Length=119, Percent_Identity=32.7731092436975, Blast_Score=87, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003442 [H]

Pfam domain/function: PF02367 UPF0079 [H]

EC number: NA

Molecular weight: Translated: 18594; Mature: 18594

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIYKIKAGTHMIFTVNSVDETISIGEQIGKLAHAGDIICLEGDLGTGKTHLTKGIAKGL
CEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCC
GIHNTITSPTFNIVNEYEGRLKFYHFDVYRVNDPDEIYAIGFDEYIFSDAVTVIEWSNYI
CCCCCCCCCHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECHHHHHHHHHHEEHHHHHH
KELIPEEYMNILVEKNSKNDFNSRKITITPYGKRYNYIKEISL
HHHCCHHHHHEEEECCCCCCCCCCEEEEEECCCCCCEEEECCC
>Mature Secondary Structure
MIIYKIKAGTHMIFTVNSVDETISIGEQIGKLAHAGDIICLEGDLGTGKTHLTKGIAKGL
CEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCC
GIHNTITSPTFNIVNEYEGRLKFYHFDVYRVNDPDEIYAIGFDEYIFSDAVTVIEWSNYI
CCCCCCCCCHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECHHHHHHHHHHEEHHHHHH
KELIPEEYMNILVEKNSKNDFNSRKITITPYGKRYNYIKEISL
HHHCCHHHHHEEEECCCCCCCCCCEEEEEECCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]