| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
Click here to switch to the map view.
The map label for this gene is 28211798
Identifier: 28211798
GI number: 28211798
Start: 2314063
End: 2315007
Strand: Direct
Name: 28211798
Synonym: CTC02189
Alternate gene names: NA
Gene position: 2314063-2315007 (Clockwise)
Preceding gene: 28211793
Following gene: 28211801
Centisome position: 82.67
GC content: 30.37
Gene sequence:
>945_bases ATGTTATCAAGAACTAACTTTATACGTCAATCCTTGGAATTGCATCTTTTTTTTGCACGTATTATGAAAGAACATTCCTT CTTTCTAGAATTAGGTTTTACACCTAAGAATAGAGATTTTACACTTAAGGCAGATGCCCTTAGAATGGAATTTGATAAAC TTTTAGCAGAGACCATTTCTCTTTCTAATTGTGTTGTTAGACCTGATGTATTAGAATCTGGTGAAGTAGTAACACCTTTT ACATTAAAAGCTGAGATAGCTTCCTCATATTTTACAGGAGTAAATATTCCAACTTCTTTAACAAAAGCTGAGGAAAGATT AAGGGGTAGTTGTTCACCTATATGCAATCCTATACTTGAACAAAGAGTATGTATGCTAAATGAAAAAGCCATAAAACTAA TTAAAGATTTAATAAGATTTAAAACAACTATATTATCAGAAGTTTTATGTTGTAGAATGTTTACAGTTAATTATCCCTTA CTTATAGATCATATTTTAAGGGAAGCAAAGCTTTATTTAATGTTAGTTCAAATGCTACAAAGTCGTAAAGTAATGAATTT ACAAAGATATGCTTATGAGCAAGAGACTTTCTGGAATAGAATTATGGCTGAACACGCAAAATTTATCCGTGGACTTCTTG ATCCTACTGAAGATGCACTTATAGATACAGCAAATAACTTTGGAAAAGAATTTGATGAATTGACAAGAGAAGCAAAGAGA GCTATGTATAAGACAATGCCAATTTCAAAGGTTACCAACCGAAGTCTTAGAGCAACTAGAAGAATAAGGAACTTTAAAAA ACAAGGTACAGAAGGCATACTAGATTGTAAAATCAGATCCATAATAATACCATTATTAGCAGATCATACTTTACGTGAAG CAAATCATTTCTTACGTTTATTAAAAATTTTTAAAAAAAGTGAATGTGTTAGATCAGATGATTAA
Upstream 100 bases:
>100_bases GTTAAATTATAACAAAAAATTCTTTCAATAAACAGTAACAATTTATATATGTAATTAATACAATTATAATAGTGAGTAAT TATATTAAAAGAGGTTAATT
Downstream 100 bases:
>100_bases ATAAAAAAGGACATTTGTCCTTTTTTATTTATTATCAATTTTGGAAGTCAATACTTATAATCATTCTATCCTTTCCAATC TGTGCCTTAGGAAAAATGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MLSRTNFIRQSLELHLFFARIMKEHSFFLELGFTPKNRDFTLKADALRMEFDKLLAETISLSNCVVRPDVLESGEVVTPF TLKAEIASSYFTGVNIPTSLTKAEERLRGSCSPICNPILEQRVCMLNEKAIKLIKDLIRFKTTILSEVLCCRMFTVNYPL LIDHILREAKLYLMLVQMLQSRKVMNLQRYAYEQETFWNRIMAEHAKFIRGLLDPTEDALIDTANNFGKEFDELTREAKR AMYKTMPISKVTNRSLRATRRIRNFKKQGTEGILDCKIRSIIIPLLADHTLREANHFLRLLKIFKKSECVRSDD
Sequences:
>Translated_314_residues MLSRTNFIRQSLELHLFFARIMKEHSFFLELGFTPKNRDFTLKADALRMEFDKLLAETISLSNCVVRPDVLESGEVVTPF TLKAEIASSYFTGVNIPTSLTKAEERLRGSCSPICNPILEQRVCMLNEKAIKLIKDLIRFKTTILSEVLCCRMFTVNYPL LIDHILREAKLYLMLVQMLQSRKVMNLQRYAYEQETFWNRIMAEHAKFIRGLLDPTEDALIDTANNFGKEFDELTREAKR AMYKTMPISKVTNRSLRATRRIRNFKKQGTEGILDCKIRSIIIPLLADHTLREANHFLRLLKIFKKSECVRSDD >Mature_314_residues MLSRTNFIRQSLELHLFFARIMKEHSFFLELGFTPKNRDFTLKADALRMEFDKLLAETISLSNCVVRPDVLESGEVVTPF TLKAEIASSYFTGVNIPTSLTKAEERLRGSCSPICNPILEQRVCMLNEKAIKLIKDLIRFKTTILSEVLCCRMFTVNYPL LIDHILREAKLYLMLVQMLQSRKVMNLQRYAYEQETFWNRIMAEHAKFIRGLLDPTEDALIDTANNFGKEFDELTREAKR AMYKTMPISKVTNRSLRATRRIRNFKKQGTEGILDCKIRSIIIPLLADHTLREANHFLRLLKIFKKSECVRSDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36554; Mature: 36554
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRTNFIRQSLELHLFFARIMKEHSFFLELGFTPKNRDFTLKADALRMEFDKLLAETIS CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHH LSNCVVRPDVLESGEVVTPFTLKAEIASSYFTGVNIPTSLTKAEERLRGSCSPICNPILE HCCCEECCCCCCCCCEECCEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHH QRVCMLNEKAIKLIKDLIRFKTTILSEVLCCRMFTVNYPLLIDHILREAKLYLMLVQMLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH SRKVMNLQRYAYEQETFWNRIMAEHAKFIRGLLDPTEDALIDTANNFGKEFDELTREAKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH AMYKTMPISKVTNRSLRATRRIRNFKKQGTEGILDCKIRSIIIPLLADHTLREANHFLRL HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKIFKKSECVRSDD HHHHHHHHHCCCCC >Mature Secondary Structure MLSRTNFIRQSLELHLFFARIMKEHSFFLELGFTPKNRDFTLKADALRMEFDKLLAETIS CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHH LSNCVVRPDVLESGEVVTPFTLKAEIASSYFTGVNIPTSLTKAEERLRGSCSPICNPILE HCCCEECCCCCCCCCEECCEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHH QRVCMLNEKAIKLIKDLIRFKTTILSEVLCCRMFTVNYPLLIDHILREAKLYLMLVQMLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH SRKVMNLQRYAYEQETFWNRIMAEHAKFIRGLLDPTEDALIDTANNFGKEFDELTREAKR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH AMYKTMPISKVTNRSLRATRRIRNFKKQGTEGILDCKIRSIIIPLLADHTLREANHFLRL HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKIFKKSECVRSDD HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA