Definition Clostridium tetani E88 chromosome, complete genome.
Accession NC_004557
Length 2,799,251

Click here to switch to the map view.

The map label for this gene is 28211597

Identifier: 28211597

GI number: 28211597

Start: 2095915

End: 2096358

Strand: Direct

Name: 28211597

Synonym: CTC01971

Alternate gene names: NA

Gene position: 2095915-2096358 (Clockwise)

Preceding gene: 28211596

Following gene: 28211598

Centisome position: 74.87

GC content: 34.91

Gene sequence:

>444_bases
ATGAGTCAAAATGTAAACTTTTCACAAAACATGGATACAATATTTTCAGGGTTAAAAGACTTTGTTAAAACAGAAAGTGT
TATGGGAACTCCACTTGTTGTTGAGGATAAAACTTTAGTTCCTGTAGTTTCAGTAGCTCTAGGTTATGGTAGTGCAACAG
GTAATGCAAAAAATGCACAACCTAACCCCAATTCATCAAATAATGACCCTAACGTTGGTTTAGGAGCTAGAGTAACAACT
AACGCTGTAGTAGTTATTGACAAAGGTTCTGTATCAATGTTACCTGTAAATGGCAAAGGAAATATGGGACAATTAATTGA
TAAGATACCAGAAATGGTTACTAATATGAGTCCAAATGCTCAACAACAAAATATGGCACAAAACCAACAACAGCAAAACC
AACAACAAAATCAACCAGCAGCTTCACCAAAACCTGGTAAATAA

Upstream 100 bases:

>100_bases
AAGTTTAAAACTTCAGCTATCATTAAATTATTAAATATAAATAGAAAAAATTATAACAAAAAATTTTCTTATGAAAGTAA
ATAAAGGAGGACTTTGAAAA

Downstream 100 bases:

>100_bases
TATTAAAACTGTTGAGAATTAATTTTCTCAGCAGTTTTTTATTTTGTACGTAACATTCGTTACAGACCTATACCTTCTAT
TTTAATATAATGTACTTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MSQNVNFSQNMDTIFSGLKDFVKTESVMGTPLVVEDKTLVPVVSVALGYGSATGNAKNAQPNPNSSNNDPNVGLGARVTT
NAVVVIDKGSVSMLPVNGKGNMGQLIDKIPEMVTNMSPNAQQQNMAQNQQQQNQQQNQPAASPKPGK

Sequences:

>Translated_147_residues
MSQNVNFSQNMDTIFSGLKDFVKTESVMGTPLVVEDKTLVPVVSVALGYGSATGNAKNAQPNPNSSNNDPNVGLGARVTT
NAVVVIDKGSVSMLPVNGKGNMGQLIDKIPEMVTNMSPNAQQQNMAQNQQQQNQQQNQPAASPKPGK
>Mature_146_residues
SQNVNFSQNMDTIFSGLKDFVKTESVMGTPLVVEDKTLVPVVSVALGYGSATGNAKNAQPNPNSSNNDPNVGLGARVTTN
AVVVIDKGSVSMLPVNGKGNMGQLIDKIPEMVTNMSPNAQQQNMAQNQQQQNQQQNQPAASPKPGK

Specific function: Unknown

COG id: COG3874

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15526; Mature: 15394

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNVNFSQNMDTIFSGLKDFVKTESVMGTPLVVEDKTLVPVVSVALGYGSATGNAKNAQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCC
PNPNSSNNDPNVGLGARVTTNAVVVIDKGSVSMLPVNGKGNMGQLIDKIPEMVTNMSPNA
CCCCCCCCCCCCCCCCEECCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCH
QQQNMAQNQQQQNQQQNQPAASPKPGK
HHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SQNVNFSQNMDTIFSGLKDFVKTESVMGTPLVVEDKTLVPVVSVALGYGSATGNAKNAQ
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCC
PNPNSSNNDPNVGLGARVTTNAVVVIDKGSVSMLPVNGKGNMGQLIDKIPEMVTNMSPNA
CCCCCCCCCCCCCCCCEECCCEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCH
QQQNMAQNQQQQNQQQNQPAASPKPGK
HHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA