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The map label for this gene is ylbH [H]

Identifier: 28210920

GI number: 28210920

Start: 1321261

End: 1321818

Strand: Direct

Name: ylbH [H]

Synonym: CTC01232

Alternate gene names: 28210920

Gene position: 1321261-1321818 (Clockwise)

Preceding gene: 28210919

Following gene: 28210921

Centisome position: 47.2

GC content: 31.0

Gene sequence:

>558_bases
ATGAGAATAATAGCAGGTAGTGCAAGAGGCAGAAAAATTCTACCACCAGAAGGTATGAATACAAGGCCTACTCTTGATAG
AGTCAAGGAAAATATCTTTAATATGATACAAGTACATGTTTATGGAGCAAAAACTTTAGACCTTTTTGCAGGTACGGGAA
GTTTAGGATTAGAAGCTGTAAGTAGAGGAGCTTCTGAATGTTATCTCATAGATAGATTTCCTAAAACTTATAGTTTATTA
GAAACTAATGTTAAAAATCTTGGATTTGAAGATAAATGTAAATGCCTTAACATGGATTCTTATGATGCCTTAACTTTTCT
AAAAGAAAAGGGAGAGGAATTTGATTTGATATTTATTGACCCTCCATACTTAAAGGATATGGTGCCTTCAGCTATAGAGA
AAATAGATGAATATAACCTTTTAAAAGAGGATGGTATTATATCTATAAAAATTGATTCAAAAGAGGAAATATTTGAGGGT
AGTGAGCATATTAAACTAGTAAGAATTAAAAGATATGGAAATACCACAGTATGCTTTTATAGACATAAGGAGGATTAA

Upstream 100 bases:

>100_bases
TTTTAATTAAATGTAATTTTTTATAAAGACTTTGTGAAAAAATAATAAATATGATAAAATTATAACAAAAACTACATAGT
TAATAGTCAGGAGGATAAAA

Downstream 100 bases:

>100_bases
AATGAATATTGCAGTGTATCCAGGAAGTTTTGATCCTATAACTAATGGACATTTAGACATAATTAAAAGAGCTTCCCAAG
TTTTTGATAAAGTAGTAGTA

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRIIAGSARGRKILPPEGMNTRPTLDRVKENIFNMIQVHVYGAKTLDLFAGTGSLGLEAVSRGASECYLIDRFPKTYSLL
ETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEEFDLIFIDPPYLKDMVPSAIEKIDEYNLLKEDGIISIKIDSKEEIFEG
SEHIKLVRIKRYGNTTVCFYRHKED

Sequences:

>Translated_185_residues
MRIIAGSARGRKILPPEGMNTRPTLDRVKENIFNMIQVHVYGAKTLDLFAGTGSLGLEAVSRGASECYLIDRFPKTYSLL
ETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEEFDLIFIDPPYLKDMVPSAIEKIDEYNLLKEDGIISIKIDSKEEIFEG
SEHIKLVRIKRYGNTTVCFYRHKED
>Mature_185_residues
MRIIAGSARGRKILPPEGMNTRPTLDRVKENIFNMIQVHVYGAKTLDLFAGTGSLGLEAVSRGASECYLIDRFPKTYSLL
ETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEEFDLIFIDPPYLKDMVPSAIEKIDEYNLLKEDGIISIKIDSKEEIFEG
SEHIKLVRIKRYGNTTVCFYRHKED

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=183, Percent_Identity=30.6010928961749, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 21126; Mature: 21126

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIIAGSARGRKILPPEGMNTRPTLDRVKENIFNMIQVHVYGAKTLDLFAGTGSLGLEAV
CEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEECCEEEEEEECCCCHHHHHH
SRGASECYLIDRFPKTYSLLETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEEFDLIFID
HCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCEEEEEEEC
PPYLKDMVPSAIEKIDEYNLLKEDGIISIKIDSKEEIFEGSEHIKLVRIKRYGNTTVCFY
CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCCEEEEEEEECCCEEEEEE
RHKED
EECCC
>Mature Secondary Structure
MRIIAGSARGRKILPPEGMNTRPTLDRVKENIFNMIQVHVYGAKTLDLFAGTGSLGLEAV
CEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEECCEEEEEEECCCCHHHHHH
SRGASECYLIDRFPKTYSLLETNVKNLGFEDKCKCLNMDSYDALTFLKEKGEEFDLIFID
HCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCEEEEEEEC
PPYLKDMVPSAIEKIDEYNLLKEDGIISIKIDSKEEIFEGSEHIKLVRIKRYGNTTVCFY
CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHCCCCCEEEEEEEECCCEEEEEE
RHKED
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]