Definition Clostridium tetani E88 chromosome, complete genome.
Accession NC_004557
Length 2,799,251

Click here to switch to the map view.

The map label for this gene is 28210799

Identifier: 28210799

GI number: 28210799

Start: 1165343

End: 1165669

Strand: Direct

Name: 28210799

Synonym: CTC01098

Alternate gene names: NA

Gene position: 1165343-1165669 (Clockwise)

Preceding gene: 28210798

Following gene: 28210800

Centisome position: 41.63

GC content: 22.63

Gene sequence:

>327_bases
ATGGCAACTTTTAAAAATCCAGTAGTAACTTGTGATAAATGCGGAAAAGATTTTAAATTAAAACAAAATAGATTAAAGAG
TGAGATAGTAAAAGAAAATATAGAAAGAACTTATTTTAAGTGTCCAAAATGTAAGCATAAATTTATAGTTATGTATAAAG
ATCAAGAGATTAAAGAAAATCTAAAGAAAATGGACAACATAAAAGTGCAGATACAAAAATCAATAAATGAAAAGAAAAAT
ACAAAAAAGTTAATAGGGAGATATGAAGAGTTATATTATAACAATTTAGAAATAAGTGAGAAATACAAAAGTTTATATGG
AAGATAA

Upstream 100 bases:

>100_bases
CACAGAACCTAAATTCGAAGATAATAAGAACGTAAACAAACAAAACAATAGTGATGTAATAGATTGGTTGAATTCCAATA
ATAAATAGGGGGAATTAATT

Downstream 100 bases:

>100_bases
AACTTAAAGGCATAGAAATATGTCTTTTTTATTCCCTAAAATGGGAGGTGAGAACACATGGCAATAAACGTAGGTACAGC
TGTTGCTTACCTTACACTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MATFKNPVVTCDKCGKDFKLKQNRLKSEIVKENIERTYFKCPKCKHKFIVMYKDQEIKENLKKMDNIKVQIQKSINEKKN
TKKLIGRYEELYYNNLEISEKYKSLYGR

Sequences:

>Translated_108_residues
MATFKNPVVTCDKCGKDFKLKQNRLKSEIVKENIERTYFKCPKCKHKFIVMYKDQEIKENLKKMDNIKVQIQKSINEKKN
TKKLIGRYEELYYNNLEISEKYKSLYGR
>Mature_107_residues
ATFKNPVVTCDKCGKDFKLKQNRLKSEIVKENIERTYFKCPKCKHKFIVMYKDQEIKENLKKMDNIKVQIQKSINEKKNT
KKLIGRYEELYYNNLEISEKYKSLYGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13052; Mature: 12920

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFKNPVVTCDKCGKDFKLKQNRLKSEIVKENIERTYFKCPKCKHKFIVMYKDQEIKEN
CCCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHH
LKKMDNIKVQIQKSINEKKNTKKLIGRYEELYYNNLEISEKYKSLYGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
ATFKNPVVTCDKCGKDFKLKQNRLKSEIVKENIERTYFKCPKCKHKFIVMYKDQEIKEN
CCCCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHH
LKKMDNIKVQIQKSINEKKNTKKLIGRYEELYYNNLEISEKYKSLYGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA