| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210778
Identifier: 28210778
GI number: 28210778
Start: 1146049
End: 1146927
Strand: Direct
Name: 28210778
Synonym: CTC01077
Alternate gene names: NA
Gene position: 1146049-1146927 (Clockwise)
Preceding gene: 28210777
Following gene: 28210779
Centisome position: 40.94
GC content: 30.6
Gene sequence:
>879_bases ATGGCGGAAGGAAAGGAAAAAGGATGGATAAGTTTATACAGGGATATTCAAGAGCATTGGATATGGGAAGATGCAGAAAA GTTAAAAGCATGGCTGGATCTTCTCCTTCTTGCCAATCATCAGAGTAGAAAAATTTTATTAGGAAATGAACTTATAGAGA TAAAAAGAGGTTCTACACATGCATCAGAATTAAAGCTTATGGATAGATGGAATTGGTCTAAGAAAAAGGTTAGAAACTTT CTTCAACTACTAGAAAAAGATAATATGATAATTTGTGAAAAATCTAAAAAGGGAACCACTATAACAATAATAAACTACGA GGTTTATCAAGGTTCAAGGAACCATAGAGAAACCATAAAAGAACCACAGGGGAACCATAAGGAAACCATAAAGGAACTAT TAGGAGACCATAAGGGATACACTAACAATAATGATAATAATTATAATAATATAAATAATGATAATAACAGTAGTGGCAGC ACTCCAAATTATATAGAATTTTTTAATAGTAATTTTCATCTGATAAATTCTTATGAAATAAATATATTAAATAGTTTTGT AAAAGATGGATTAAGTGAGGAAGTAATATTATTAGCTTTAAAAAAAGCAGTAGAAAATAATGTTAGGACTATAAAGTATG TTAAAAGCATATTGCAAAACTGGTTAGAAAACAATATTAAAACTGTTGAAGGAGTAAAAGCAGAGGAGGAAAGATTCAAG AGGGACATTGAACATAAAAAAGCAAAGGGCAATGTAGAAAGAAAAGACAATGGAGCTAAAGTAGACAGTTTTAACGGCTA TCAGCAAAGAACATACGACGGCAGTGATGGTGGAATGACATTTGATGATTTAGAAAAGAAACTTTTAGGTTGGAAATAA
Upstream 100 bases:
>100_bases AAGGAGAAGAATACTACGATATTGATGGAACTATACTTTGTGAAGAATGTATTAGAGATTACAAGCATACAGCAGAACTC TAATAACTAAGGAGGAAACT
Downstream 100 bases:
>100_bases GGAGGGAAAACAATGCGAAAGATATGGAGAAATGCTGAATTGGACTTTATAAGGAAAAATAAAGGAAAATTAAGTTACAA AGAAATGTCTAAACATCTAA
Product: phage protein
Products: NA
Alternate protein names: Phage Replication Protein; Replication Protein O; Phage Regulatory Protein; DNAD Domain Containing Protein; DNAD Domain-Containing Protein
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MAEGKEKGWISLYRDIQEHWIWEDAEKLKAWLDLLLLANHQSRKILLGNELIEIKRGSTHASELKLMDRWNWSKKKVRNF LQLLEKDNMIICEKSKKGTTITIINYEVYQGSRNHRETIKEPQGNHKETIKELLGDHKGYTNNNDNNYNNINNDNNSSGS TPNYIEFFNSNFHLINSYEINILNSFVKDGLSEEVILLALKKAVENNVRTIKYVKSILQNWLENNIKTVEGVKAEEERFK RDIEHKKAKGNVERKDNGAKVDSFNGYQQRTYDGSDGGMTFDDLEKKLLGWK
Sequences:
>Translated_292_residues MAEGKEKGWISLYRDIQEHWIWEDAEKLKAWLDLLLLANHQSRKILLGNELIEIKRGSTHASELKLMDRWNWSKKKVRNF LQLLEKDNMIICEKSKKGTTITIINYEVYQGSRNHRETIKEPQGNHKETIKELLGDHKGYTNNNDNNYNNINNDNNSSGS TPNYIEFFNSNFHLINSYEINILNSFVKDGLSEEVILLALKKAVENNVRTIKYVKSILQNWLENNIKTVEGVKAEEERFK RDIEHKKAKGNVERKDNGAKVDSFNGYQQRTYDGSDGGMTFDDLEKKLLGWK >Mature_291_residues AEGKEKGWISLYRDIQEHWIWEDAEKLKAWLDLLLLANHQSRKILLGNELIEIKRGSTHASELKLMDRWNWSKKKVRNFL QLLEKDNMIICEKSKKGTTITIINYEVYQGSRNHRETIKEPQGNHKETIKELLGDHKGYTNNNDNNYNNINNDNNSSGST PNYIEFFNSNFHLINSYEINILNSFVKDGLSEEVILLALKKAVENNVRTIKYVKSILQNWLENNIKTVEGVKAEEERFKR DIEHKKAKGNVERKDNGAKVDSFNGYQQRTYDGSDGGMTFDDLEKKLLGWK
Specific function: Unknown
COG id: COG3935
COG function: function code L; Putative primosome component and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34066; Mature: 33935
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEGKEKGWISLYRDIQEHWIWEDAEKLKAWLDLLLLANHQSRKILLGNELIEIKRGSTH CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCH ASELKLMDRWNWSKKKVRNFLQLLEKDNMIICEKSKKGTTITIINYEVYQGSRNHRETIK HHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHHC EPQGNHKETIKELLGDHKGYTNNNDNNYNNINNDNNSSGSTPNYIEFFNSNFHLINSYEI CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCEEEEEEEHH NILNSFVKDGLSEEVILLALKKAVENNVRTIKYVKSILQNWLENNIKTVEGVKAEEERFK HHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHH RDIEHKKAKGNVERKDNGAKVDSFNGYQQRTYDGSDGGMTFDDLEKKLLGWK HHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure AEGKEKGWISLYRDIQEHWIWEDAEKLKAWLDLLLLANHQSRKILLGNELIEIKRGSTH CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCCCH ASELKLMDRWNWSKKKVRNFLQLLEKDNMIICEKSKKGTTITIINYEVYQGSRNHRETIK HHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHHC EPQGNHKETIKELLGDHKGYTNNNDNNYNNINNDNNSSGSTPNYIEFFNSNFHLINSYEI CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCEEEEEEEHH NILNSFVKDGLSEEVILLALKKAVENNVRTIKYVKSILQNWLENNIKTVEGVKAEEERFK HHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHH RDIEHKKAKGNVERKDNGAKVDSFNGYQQRTYDGSDGGMTFDDLEKKLLGWK HHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA