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The map label for this gene is yqgF [C]

Identifier: 28210758

GI number: 28210758

Start: 1126830

End: 1127246

Strand: Direct

Name: yqgF [C]

Synonym: CTC01056

Alternate gene names: 28210758

Gene position: 1126830-1127246 (Clockwise)

Preceding gene: 28210757

Following gene: 28210759

Centisome position: 40.25

GC content: 31.18

Gene sequence:

>417_bases
ATGAGAATACTTGGATTAGATGTGGGAGATAGAACTATAGGAGTTGCTATAAGCGATCCCTTAGGGTGGACGGCTCAAGG
TGTAAAAACCATAAAAAGAAGTAATTTAAAAAACGATATAAAAGAAATAGAAGATATATGTAATGAGTATAAAGTAGATA
AAATAGTGTCAGGTCTTCCTAAAAATATGAATGGTACATTAGGACCGCAAAGTGAAAAAGTTACAGAATTTTGCGATATA
CTAAAAAAAGAGTTGGAAAAAGAAATAATTATGTGGGATGAAAGACTAACTACAGTAGCGGCACATAAAGCCATGATAGA
AGGAGATTTATCTAGGGCTAAAAGAAAAAAGATTGTAGATAAAATAGCTGCTATATACATATTACAAGGATATCTTGATA
GCGTGTATAATAAATAA

Upstream 100 bases:

>100_bases
GAGATATTAGAGGAAGTAATAAAAAACTACTTAAGGATTAAATAAAAGTGCCCTTAAGGGCACTTTTTATTTTTAAGAAT
CAAAAATAAAGGAGCAGGGC

Downstream 100 bases:

>100_bases
ATAAGAGGTGAATACTATTATGGAAAATGATGTAACACATATAACTTTAGTTGACGAAGATGGAAAAGATATAGACTTTG
AAGTTATAACAAAATTAGAT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MRILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPKNMNGTLGPQSEKVTEFCDI
LKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVDKIAAIYILQGYLDSVYNK

Sequences:

>Translated_138_residues
MRILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPKNMNGTLGPQSEKVTEFCDI
LKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVDKIAAIYILQGYLDSVYNK
>Mature_138_residues
MRILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPKNMNGTLGPQSEKVTEFCDI
LKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVDKIAAIYILQGYLDSVYNK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=33.5820895522388, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CLOTE (Q896F1)

Other databases:

- EMBL:   AE015927
- RefSeq:   NP_781702.1
- ProteinModelPortal:   Q896F1
- SMR:   Q896F1
- GeneID:   1059385
- GenomeReviews:   AE015927_GR
- KEGG:   ctc:CTC01056
- NMPDR:   fig|212717.1.peg.924
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q896F1
- ProtClustDB:   PRK00109
- BioCyc:   CTET212717:CTC_01056-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15522; Mature: 15522

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLP
CEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KNMNGTLGPQSEKVTEFCDILKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAAIYILQGYLDSVYNK
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRILGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLP
CEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KNMNGTLGPQSEKVTEFCDILKKELEKEIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVD
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAAIYILQGYLDSVYNK
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129