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The map label for this gene is yrvN [H]

Identifier: 28210750

GI number: 28210750

Start: 1117281

End: 1118564

Strand: Direct

Name: yrvN [H]

Synonym: CTC01048

Alternate gene names: 28210750

Gene position: 1117281-1118564 (Clockwise)

Preceding gene: 28210749

Following gene: 28210751

Centisome position: 39.91

GC content: 29.75

Gene sequence:

>1284_bases
ATGTTTGAAAAACCATTAGCAGATAAAATAAGACCAAAAATCTTAGATGAGGTTTTTGGTCAAAAACACATTCTTGGGCA
GGGAAAAATACTAAGAAGAATAATAAATTCTGAGAAACTTACTAATATGATATTTTATGGTCCGCCAGGAACTGGAAAGA
CTACAGTGGCAAATATTATTGCAAATAGAACAAATAAAACTTTATATAAATTAAATGCTACTAATGCATCTTTAGCAGAC
ATAAAAAATATAATAGCAGATTTAGACAGTTTCATGGGAGTAGAGGGAGTAGTTTTATACTTAGATGAAATTCAGAATTT
TAATAAAAAACAACAACAATCATTATTAGAATTTATGGAAAAAGGGCAAATAACTTTAATTGCAAGTACTACAGAAAATC
CATACCACTACATATATAAAGCAATATTGAGTAGAGCAACTATTTTTGAATTTAAGTCTTTATTAAAAGAAGATATATTA
GAAGCACTTAATAGAGCTTTGGATATTTTAAAAAAAGAGGATTTTAAAAATACATATATATATTTTTCAAAAGATGCCCT
AGAACACATTGCTAAGGTAAGCAATGGAGATTTAAGAAGAGCATTAAATGGGCTAGAGCTTTGTGTCTACTCTACTAAGC
CTACATTAGAAAATAAAATAGTTGTGGACTTAGAAGTGGCAATTGAGTGCACCCAAAGGAAGGTATTAAATTATGATAAA
TTTGGAGATAGTCATTATGACATACTTAGTGCTTTTCAAAAGTCTATTAGGGGAAGTGATGCAGATGCATCTATTCACTA
TTTAGCAAGACTTATAGAGGCAGGAGATTTAATTTCTATTTGTAGAAGACTTTTGGTTATAGCCAGTGAAGACATAGGTT
TAGCCTATCCTAGTGCAATATCCATAGTAAAAAATTGTGTGGATTCTGCTATGCAATTGGGACTTCCAGAGGGGAGAATA
CCGTTAGCTCAGGCAACTATATTGTTAGCTACTTCTCCTAAATCAAATTCATGTATAGAAGCTATAGATAAAGCATTAAT
GGATATAAGAAAAAAGGATGTAGGGGATATACCAAATCATATAAAAGATTCACATTATAATGGAGCGGAAATTTTAAATA
GAGGAACTGGATATAAGTATCCACATGATTGCAAAAATAATTATGTGGAGCAAGAGTATTTACCTAAAAAACTTAAAGGC
AAGAAGTATTATATTCCTCAAGAGAACAAATATGAATATAGTATAAAAAGATATTGGAGTTCAATAAAAAAGAATAATTT
ATAA

Upstream 100 bases:

>100_bases
AAAGACAAATTTTACAAAGATGGAGATTATCATACTTTCTATTATGCGGAGATATTAGATTGTTATATAAAATAGTACTT
AAAGGAGTAAAATATTAATT

Downstream 100 bases:

>100_bases
GGATTTTTATTCTTTGATGGCTAGAAAATTAATTATAAATTTATAGTTGACAGGAATACTCGGATTTGTTATTATAAATT
TGAAAGTTTAGTAAAGCAGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MFEKPLADKIRPKILDEVFGQKHILGQGKILRRIINSEKLTNMIFYGPPGTGKTTVANIIANRTNKTLYKLNATNASLAD
IKNIIADLDSFMGVEGVVLYLDEIQNFNKKQQQSLLEFMEKGQITLIASTTENPYHYIYKAILSRATIFEFKSLLKEDIL
EALNRALDILKKEDFKNTYIYFSKDALEHIAKVSNGDLRRALNGLELCVYSTKPTLENKIVVDLEVAIECTQRKVLNYDK
FGDSHYDILSAFQKSIRGSDADASIHYLARLIEAGDLISICRRLLVIASEDIGLAYPSAISIVKNCVDSAMQLGLPEGRI
PLAQATILLATSPKSNSCIEAIDKALMDIRKKDVGDIPNHIKDSHYNGAEILNRGTGYKYPHDCKNNYVEQEYLPKKLKG
KKYYIPQENKYEYSIKRYWSSIKKNNL

Sequences:

>Translated_427_residues
MFEKPLADKIRPKILDEVFGQKHILGQGKILRRIINSEKLTNMIFYGPPGTGKTTVANIIANRTNKTLYKLNATNASLAD
IKNIIADLDSFMGVEGVVLYLDEIQNFNKKQQQSLLEFMEKGQITLIASTTENPYHYIYKAILSRATIFEFKSLLKEDIL
EALNRALDILKKEDFKNTYIYFSKDALEHIAKVSNGDLRRALNGLELCVYSTKPTLENKIVVDLEVAIECTQRKVLNYDK
FGDSHYDILSAFQKSIRGSDADASIHYLARLIEAGDLISICRRLLVIASEDIGLAYPSAISIVKNCVDSAMQLGLPEGRI
PLAQATILLATSPKSNSCIEAIDKALMDIRKKDVGDIPNHIKDSHYNGAEILNRGTGYKYPHDCKNNYVEQEYLPKKLKG
KKYYIPQENKYEYSIKRYWSSIKKNNL
>Mature_427_residues
MFEKPLADKIRPKILDEVFGQKHILGQGKILRRIINSEKLTNMIFYGPPGTGKTTVANIIANRTNKTLYKLNATNASLAD
IKNIIADLDSFMGVEGVVLYLDEIQNFNKKQQQSLLEFMEKGQITLIASTTENPYHYIYKAILSRATIFEFKSLLKEDIL
EALNRALDILKKEDFKNTYIYFSKDALEHIAKVSNGDLRRALNGLELCVYSTKPTLENKIVVDLEVAIECTQRKVLNYDK
FGDSHYDILSAFQKSIRGSDADASIHYLARLIEAGDLISICRRLLVIASEDIGLAYPSAISIVKNCVDSAMQLGLPEGRI
PLAQATILLATSPKSNSCIEAIDKALMDIRKKDVGDIPNHIKDSHYNGAEILNRGTGYKYPHDCKNNYVEQEYLPKKLKG
KKYYIPQENKYEYSIKRYWSSIKKNNL

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=34.4748858447489, Blast_Score=245, Evalue=6e-65,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=31.7351598173516, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI4506491, Length=219, Percent_Identity=30.1369863013699, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI31881687, Length=219, Percent_Identity=30.1369863013699, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI6677723, Length=218, Percent_Identity=27.9816513761468, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI31563534, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI194306571, Length=217, Percent_Identity=27.6497695852535, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI194306567, Length=217, Percent_Identity=27.6497695852535, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1787119, Length=429, Percent_Identity=36.5967365967366, Blast_Score=272, Evalue=3e-74,
Organism=Caenorhabditis elegans, GI71986063, Length=235, Percent_Identity=28.936170212766, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17541988, Length=310, Percent_Identity=24.1935483870968, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=423, Percent_Identity=36.4066193853428, Blast_Score=227, Evalue=2e-60,
Organism=Saccharomyces cerevisiae, GI6324039, Length=264, Percent_Identity=30.6818181818182, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322528, Length=230, Percent_Identity=30, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324478, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI18859927, Length=222, Percent_Identity=29.2792792792793, Blast_Score=82, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 48362; Mature: 48362

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEKPLADKIRPKILDEVFGQKHILGQGKILRRIINSEKLTNMIFYGPPGTGKTTVANII
CCCCCCHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
ANRTNKTLYKLNATNASLADIKNIIADLDSFMGVEGVVLYLDEIQNFNKKQQQSLLEFME
HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KGQITLIASTTENPYHYIYKAILSRATIFEFKSLLKEDILEALNRALDILKKEDFKNTYI
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YFSKDALEHIAKVSNGDLRRALNGLELCVYSTKPTLENKIVVDLEVAIECTQRKVLNYDK
EECHHHHHHHHHCCCCHHHHHHCHHEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHCHHH
FGDSHYDILSAFQKSIRGSDADASIHYLARLIEAGDLISICRRLLVIASEDIGLAYPSAI
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHH
SIVKNCVDSAMQLGLPEGRIPLAQATILLATSPKSNSCIEAIDKALMDIRKKDVGDIPNH
HHHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHH
IKDSHYNGAEILNRGTGYKYPHDCKNNYVEQEYLPKKLKGKKYYIPQENKYEYSIKRYWS
HCCCCCCCHHHHHCCCCCCCCCHHHCCCCCHHHCCHHHCCCEEECCCCCCHHHHHHHHHH
SIKKNNL
HHHCCCC
>Mature Secondary Structure
MFEKPLADKIRPKILDEVFGQKHILGQGKILRRIINSEKLTNMIFYGPPGTGKTTVANII
CCCCCCHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
ANRTNKTLYKLNATNASLADIKNIIADLDSFMGVEGVVLYLDEIQNFNKKQQQSLLEFME
HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KGQITLIASTTENPYHYIYKAILSRATIFEFKSLLKEDILEALNRALDILKKEDFKNTYI
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
YFSKDALEHIAKVSNGDLRRALNGLELCVYSTKPTLENKIVVDLEVAIECTQRKVLNYDK
EECHHHHHHHHHCCCCHHHHHHCHHEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHCHHH
FGDSHYDILSAFQKSIRGSDADASIHYLARLIEAGDLISICRRLLVIASEDIGLAYPSAI
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHH
SIVKNCVDSAMQLGLPEGRIPLAQATILLATSPKSNSCIEAIDKALMDIRKKDVGDIPNH
HHHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHH
IKDSHYNGAEILNRGTGYKYPHDCKNNYVEQEYLPKKLKGKKYYIPQENKYEYSIKRYWS
HCCCCCCCHHHHHCCCCCCCCCHHHCCCCCHHHCCHHHCCCEEECCCCCCHHHHHHHHHH
SIKKNNL
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]