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The map label for this gene is rnfB [H]

Identifier: 28210729

GI number: 28210729

Start: 1092010

End: 1092882

Strand: Direct

Name: rnfB [H]

Synonym: CTC01024

Alternate gene names: 28210729

Gene position: 1092010-1092882 (Clockwise)

Preceding gene: 28210728

Following gene: 28210734

Centisome position: 39.01

GC content: 36.66

Gene sequence:

>873_bases
GTGGATTTAAATAATTTAATAGCCCCTGTCTTAAGTTTAGGGGGACTTGGTATAATTTTCGGTGCTCTATTAGGATATGC
ATCAAAGAAATTTGCTGTAGAAGTTGATCCAAGAGTACCTCAAGTAAGAGATGCTCTTCCAGGAGCAAACTGTGGTGGTT
GTGGATTTGCAGGTTGTGATGCTTATGCAGATGCAGTTGTAAATGCAGGAGCTTCACCGAGTGGATGTCCTGTTGGAGGA
GCTGCATGTGCTAGTAAAATAGCAGAAATAATGGGAGTAACAGTGGATACATCCGAGCCTAAAAAAGCATATGTAAAATG
TCAAGGAACATGTAATAATGCTAAAGAAAAATATGAATATTATGGAGCAATGACCTGTGTGGATGCTGCTAATATTCCAG
GAGCAGGTTCTAAACAATGCTCATATGGATGTATGGGACTTGGAAGTTGTACTCAAGTGTGTTTATTTGATGCTATAACT
ATAGAAGATGGAATAGCTGTTATAGATGAAGAAAAATGTACAGGCTGTGGAGCTTGTGTAGATATATGTCCTAAGGCTGT
TATTGAATTAACACCAATGTCAAAGAAAGTACGTATTGCTTGTAATTCACATGATAAGGGAATTTCAGTTAAGAATTCAT
GTGCTGTTGGATGTATATCCTGTGGTCTTTGTGCGAGAAATTGTCCAGTAGAAGCTATAGAAATGGTAGATAATTTACCA
GTTATAAACTATGACAAATGTGTTCAATGCGGAATTTGTGTAAAGAAATGTCCTACAAAAGCTATTGCAAATCTTAAGAA
AGATCAAAAGGTAGCTCCAAAAGCTAAACCAGCAACTGAAGTTAAAGAAGCTAAGAAAACTGAAGATAAATAA

Upstream 100 bases:

>100_bases
AAAAGGTCTACCAATAACACTTGTTACAGCAGGATTAATGGCTATAGCGTTTCTAGGATTCCAAGGACTAATATAAAGTA
AAAGTTTAGGAGGTGTTAAC

Downstream 100 bases:

>100_bases
AAAAATCTGTGTTCCATATAATTGGAACACAGATTTTTATTTTAAATTTTTTAAATTCTTAACAAGTGGCACTTTAGAAG
TATGTTTGTATAGCAAATTA

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDLNNLIAPVLSLGGLGIIFGALLGYASKKFAVEVDPRVPQVRDALPGANCGGCGFAGCDAYADAVVNAGASPSGCPVGG
AACASKIAEIMGVTVDTSEPKKAYVKCQGTCNNAKEKYEYYGAMTCVDAANIPGAGSKQCSYGCMGLGSCTQVCLFDAIT
IEDGIAVIDEEKCTGCGACVDICPKAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNCPVEAIEMVDNLP
VINYDKCVQCGICVKKCPTKAIANLKKDQKVAPKAKPATEVKEAKKTEDK

Sequences:

>Translated_290_residues
MDLNNLIAPVLSLGGLGIIFGALLGYASKKFAVEVDPRVPQVRDALPGANCGGCGFAGCDAYADAVVNAGASPSGCPVGG
AACASKIAEIMGVTVDTSEPKKAYVKCQGTCNNAKEKYEYYGAMTCVDAANIPGAGSKQCSYGCMGLGSCTQVCLFDAIT
IEDGIAVIDEEKCTGCGACVDICPKAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNCPVEAIEMVDNLP
VINYDKCVQCGICVKKCPTKAIANLKKDQKVAPKAKPATEVKEAKKTEDK
>Mature_290_residues
MDLNNLIAPVLSLGGLGIIFGALLGYASKKFAVEVDPRVPQVRDALPGANCGGCGFAGCDAYADAVVNAGASPSGCPVGG
AACASKIAEIMGVTVDTSEPKKAYVKCQGTCNNAKEKYEYYGAMTCVDAANIPGAGSKQCSYGCMGLGSCTQVCLFDAIT
IEDGIAVIDEEKCTGCGACVDICPKAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNCPVEAIEMVDNLP
VINYDKCVQCGICVKKCPTKAIANLKKDQKVAPKAKPATEVKEAKKTEDK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=194, Percent_Identity=32.9896907216495, Blast_Score=98, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 29946; Mature: 29946

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
11.0 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
11.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNNLIAPVLSLGGLGIIFGALLGYASKKFAVEVDPRVPQVRDALPGANCGGCGFAGCD
CCHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCHHH
AYADAVVNAGASPSGCPVGGAACASKIAEIMGVTVDTSEPKKAYVKCQGTCNNAKEKYEY
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
YGAMTCVDAANIPGAGSKQCSYGCMGLGSCTQVCLFDAITIEDGIAVIDEEKCTGCGACV
HHHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCEEEEECCCCCCCHHHH
DICPKAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNCPVEAIEMVDNLP
HHCCHHHEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCC
VINYDKCVQCGICVKKCPTKAIANLKKDQKVAPKAKPATEVKEAKKTEDK
CCCHHHHHHHCCHHHHCCHHHHHHCHHHCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MDLNNLIAPVLSLGGLGIIFGALLGYASKKFAVEVDPRVPQVRDALPGANCGGCGFAGCD
CCHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCHHH
AYADAVVNAGASPSGCPVGGAACASKIAEIMGVTVDTSEPKKAYVKCQGTCNNAKEKYEY
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHH
YGAMTCVDAANIPGAGSKQCSYGCMGLGSCTQVCLFDAITIEDGIAVIDEEKCTGCGACV
HHHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEECCCEEEEECCCCCCCHHHH
DICPKAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNCPVEAIEMVDNLP
HHCCHHHEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCC
VINYDKCVQCGICVKKCPTKAIANLKKDQKVAPKAKPATEVKEAKKTEDK
CCCHHHHHHHCCHHHHCCHHHHHHCHHHCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA