| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
Click here to switch to the map view.
The map label for this gene is cbiK [H]
Identifier: 28210463
GI number: 28210463
Start: 767134
End: 767937
Strand: Direct
Name: cbiK [H]
Synonym: CTC00743
Alternate gene names: 28210463
Gene position: 767134-767937 (Clockwise)
Preceding gene: 28210462
Following gene: 28210464
Centisome position: 27.4
GC content: 28.11
Gene sequence:
>804_bases ATGTCAAAGAAAGGTATCTTAGTAGTAAGTTTTGGGACAAGTTATGAGGAAACAAGAAAGGTTACAATTGAAGCTATAGA AGATAGAATAAGAGAAACTTATAAGGATTATGAAATTAGAAGAGCATTCACTTCCGGAATGATAATTAATAAATTAAAAA AGAGAGATAATATACATATAGATAATCCTGAAGAGGCTTTAGAGAAAATGGCTAAAGATGGGTTCGAAGAAGTTATAGTT CAATCTCTACATATAATTCCAGGGGATGAATATGATGAAATAAAAGTAGCTGTTCATAGATTTAGAAATAAAAAAGTATT TAAAAAACTTACACTAGGAAGACCTCTACTTTATAGAATAGAGGATTATTTCAATGTAGTAGAAGCTTTAAAACCACAAA TACCTGAAACTAGAGAAGATTCTGCTGTGTTATTTATGGGACATGGAAGTGTACATTCTTCTAATTCATGTTATTCACAA TTTCAATATGTGTTAAATGAAAGCGGACTAAAAAATATTTTTGTAGCTAATGTAGAAGGATTTCCAGAAATAGATGTAAT TATATCTAAACTAAAAGAAGAAAATATAAAAGAAGTAACACTAATGCCTTTTATGATAGTAGCAGGAGATCATGCAACAA ATGATATGGCAGGAGAAGATGAAGATTCTTGGAAGAATATATTAGAAAATGAAGGTTTTAAAATAAATATATATCTTCAT GGATTAGGAGAAAATAAGGGAATACAAGATATCTATATCCAATATGTTCAAGATTGTATAGATGATAATCCTTTAAAAAA ATAA
Upstream 100 bases:
>100_bases CCTATGAAAATCTAAAGGATATACAAAATATAAATCTTTTAGGAGAAATAAAAAAAGGAACTTAAATATTATAAAGTCAA AAGAAAGGAAAGATGTTTTT
Downstream 100 bases:
>100_bases ATATAAACATTTAAACCTTTAATTTTTGACTAGGGAAAATAGTATTAAAAGTATTTAGAAATAATAGATATAAGTATTTA TTTATGTTATATTAAGAGTA
Product: anaerobic cobalt chelatase cbiK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MSKKGILVVSFGTSYEETRKVTIEAIEDRIRETYKDYEIRRAFTSGMIINKLKKRDNIHIDNPEEALEKMAKDGFEEVIV QSLHIIPGDEYDEIKVAVHRFRNKKVFKKLTLGRPLLYRIEDYFNVVEALKPQIPETREDSAVLFMGHGSVHSSNSCYSQ FQYVLNESGLKNIFVANVEGFPEIDVIISKLKEENIKEVTLMPFMIVAGDHATNDMAGEDEDSWKNILENEGFKINIYLH GLGENKGIQDIYIQYVQDCIDDNPLKK
Sequences:
>Translated_267_residues MSKKGILVVSFGTSYEETRKVTIEAIEDRIRETYKDYEIRRAFTSGMIINKLKKRDNIHIDNPEEALEKMAKDGFEEVIV QSLHIIPGDEYDEIKVAVHRFRNKKVFKKLTLGRPLLYRIEDYFNVVEALKPQIPETREDSAVLFMGHGSVHSSNSCYSQ FQYVLNESGLKNIFVANVEGFPEIDVIISKLKEENIKEVTLMPFMIVAGDHATNDMAGEDEDSWKNILENEGFKINIYLH GLGENKGIQDIYIQYVQDCIDDNPLKK >Mature_266_residues SKKGILVVSFGTSYEETRKVTIEAIEDRIRETYKDYEIRRAFTSGMIINKLKKRDNIHIDNPEEALEKMAKDGFEEVIVQ SLHIIPGDEYDEIKVAVHRFRNKKVFKKLTLGRPLLYRIEDYFNVVEALKPQIPETREDSAVLFMGHGSVHSSNSCYSQF QYVLNESGLKNIFVANVEGFPEIDVIISKLKEENIKEVTLMPFMIVAGDHATNDMAGEDEDSWKNILENEGFKINIYLHG LGENKGIQDIYIQYVQDCIDDNPLKK
Specific function: Chelates cobalt to the cobalamin precursor as part of the anaerobic pathway to cobalamin biosynthesis [H]
COG id: COG4822
COG function: function code H; Cobalamin biosynthesis protein CbiK, Co2+ chelatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CbiK family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010388 [H]
Pfam domain/function: PF06180 CbiK [H]
EC number: =4.99.1.3 [H]
Molecular weight: Translated: 30743; Mature: 30612
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00761 SPASE_I_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKGILVVSFGTSYEETRKVTIEAIEDRIRETYKDYEIRRAFTSGMIINKLKKRDNIHI CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DNPEEALEKMAKDGFEEVIVQSLHIIPGDEYDEIKVAVHRFRNKKVFKKLTLGRPLLYRI CCHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH EDYFNVVEALKPQIPETREDSAVLFMGHGSVHSSNSCYSQFQYVLNESGLKNIFVANVEG HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC FPEIDVIISKLKEENIKEVTLMPFMIVAGDHATNDMAGEDEDSWKNILENEGFKINIYLH CCHHHHHHHHHHHCCCCEEEEHEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEE GLGENKGIQDIYIQYVQDCIDDNPLKK ECCCCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SKKGILVVSFGTSYEETRKVTIEAIEDRIRETYKDYEIRRAFTSGMIINKLKKRDNIHI CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DNPEEALEKMAKDGFEEVIVQSLHIIPGDEYDEIKVAVHRFRNKKVFKKLTLGRPLLYRI CCHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH EDYFNVVEALKPQIPETREDSAVLFMGHGSVHSSNSCYSQFQYVLNESGLKNIFVANVEG HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCC FPEIDVIISKLKEENIKEVTLMPFMIVAGDHATNDMAGEDEDSWKNILENEGFKINIYLH CCHHHHHHHHHHHCCCCEEEEHEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEE GLGENKGIQDIYIQYVQDCIDDNPLKK ECCCCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8501034; 11677609; 9150215; 10451360 [H]