Click here to switch to the map view.

The map label for this gene is ydcR [C]

Identifier: 28210408

GI number: 28210408

Start: 701022

End: 702467

Strand: Direct

Name: ydcR [C]

Synonym: CTC00684

Alternate gene names: 28210408

Gene position: 701022-702467 (Clockwise)

Preceding gene: 28210407

Following gene: 28210409

Centisome position: 25.04

GC content: 27.8

Gene sequence:

>1446_bases
ATGTTTCCTATTTTTAATATAAAGGATGGTCAGATAGCCTATGAAGAAATATATAAATACTTAAAAGAAATTATAAAAAA
TGGAATGATGCCATCAGGAAGTAAATTACCTTCTTCAAGAGAGATGGCAACCATGACTACATTAAGTAGAAATACTATAA
TAAGAGCTTATGAGCTTTTAGAGGAAGAAAATTTAGTTTATACAAAAAGAGGAAAAGGAACATTTGTAAGTGACATAAAG
ATAAGTGAGAATAATGATTGGAAAATAGATTGGTATAGTAAGATAAATGAATATGGAAAGATGTCAGAAGACTTAGATAT
AATGAAAACTGAAGCATTATATAAAAAAGGTATGATTTCTTTTAAAAGTATAGCTCCAGATGAAAAATTATTTGATGTAG
AAGAATTAAAAAGAGCTTTTTTAAATAGGGTATCCTTAGAAGGGGAAAAAATATTAAATTATGGTTATGCTAAAGGATAT
AAGCCTCTTATAGATTACCTTTTAGAATACATGAAAGAAAAAGGTGTAAATATAAAAAATAAGGATATATTAATTACCAA
TGGTTTTACAGAAGGGTTTGATATAGTACTTTCATCCCTTTTAAATGAAGGAGATAAAATAATATGTGAAAATCCTACCC
ATAATACAGCAATTAAACTTATGAGACTTCATAAGTTGGATATAGTAGGTGTTACCATAGATGATAAGGGTGTAGACTTA
AATCAGTTAGAAAATAAGCTAAAGAATAACCAAGTAAAGCTTTCCTATGTAATTCCATCGTATCATAATCCTACAGGTAG
GGTTATGTCTTTTAAGAGAAGAAAAAAGTTTTATGAAATATTAAAAAAATATAATGTACCCATAGTAGAAGATGGATTTA
ATGAAGAACTTCAACACTCGGGAACTCATATAGCACCAATTGCAGCTATAGCGGGAGAAGAAAACTCCATTATATATATA
GGTAGTCTTTCAAAAATACTTTTTCCAGGTATGAGAATAGGATGGATTTTAGCAGACAAAAGATTAATAGATATCTTAGA
AAGTGTTAAAAGAAGTAGAAATATACACACGTCTTTTTTAGATCAAGGAATACTTTATGAATATATGAATAGTGGGGCTT
TTGAGAAGTATGTAAAAAAAGTAAAGACAATATATAAAGAGAAATATGAATATATAATGAAACTTTGTAAAGAAGAAATT
CCTAATAAATATATTCTAGGCGATGGAGGACTTTATATATTTATAAAATTAAAAAATATAAAGTCACGAGAACTTTTAAA
AGCCTGTCTTAAAAGAAAAGTTATATTTACTCCAGGAGATATGTTTTTCATAGATAATGAAGGTGAGGACACACTGCGGT
TAGGTTTTTCTAGAAATTCTTTAGAAGAAATAGAAAAGGGAATAAAGATAATTGGGGAAGAAGCACGTAGTATACTTAAC
AAGTAA

Upstream 100 bases:

>100_bases
CTTTCCCAAAAGTGCTAAAGCTTATGGCTTAAATTTTAGTGAACTTTTAGATAAGATAATAGAACTTTCCATTAAAGAAT
ATGAATTTTGAGGTGTTTTT

Downstream 100 bases:

>100_bases
TAATAAAGTATGTATTGTAACTAATATGTAATACTATTGTAAATAAGGCGTAATTTATTTTAATCAAATAAGATATATCA
TATAATTGTAAGGATTTATA

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MFPIFNIKDGQIAYEEIYKYLKEIIKNGMMPSGSKLPSSREMATMTTLSRNTIIRAYELLEEENLVYTKRGKGTFVSDIK
ISENNDWKIDWYSKINEYGKMSEDLDIMKTEALYKKGMISFKSIAPDEKLFDVEELKRAFLNRVSLEGEKILNYGYAKGY
KPLIDYLLEYMKEKGVNIKNKDILITNGFTEGFDIVLSSLLNEGDKIICENPTHNTAIKLMRLHKLDIVGVTIDDKGVDL
NQLENKLKNNQVKLSYVIPSYHNPTGRVMSFKRRKKFYEILKKYNVPIVEDGFNEELQHSGTHIAPIAAIAGEENSIIYI
GSLSKILFPGMRIGWILADKRLIDILESVKRSRNIHTSFLDQGILYEYMNSGAFEKYVKKVKTIYKEKYEYIMKLCKEEI
PNKYILGDGGLYIFIKLKNIKSRELLKACLKRKVIFTPGDMFFIDNEGEDTLRLGFSRNSLEEIEKGIKIIGEEARSILN
K

Sequences:

>Translated_481_residues
MFPIFNIKDGQIAYEEIYKYLKEIIKNGMMPSGSKLPSSREMATMTTLSRNTIIRAYELLEEENLVYTKRGKGTFVSDIK
ISENNDWKIDWYSKINEYGKMSEDLDIMKTEALYKKGMISFKSIAPDEKLFDVEELKRAFLNRVSLEGEKILNYGYAKGY
KPLIDYLLEYMKEKGVNIKNKDILITNGFTEGFDIVLSSLLNEGDKIICENPTHNTAIKLMRLHKLDIVGVTIDDKGVDL
NQLENKLKNNQVKLSYVIPSYHNPTGRVMSFKRRKKFYEILKKYNVPIVEDGFNEELQHSGTHIAPIAAIAGEENSIIYI
GSLSKILFPGMRIGWILADKRLIDILESVKRSRNIHTSFLDQGILYEYMNSGAFEKYVKKVKTIYKEKYEYIMKLCKEEI
PNKYILGDGGLYIFIKLKNIKSRELLKACLKRKVIFTPGDMFFIDNEGEDTLRLGFSRNSLEEIEKGIKIIGEEARSILN
K
>Mature_481_residues
MFPIFNIKDGQIAYEEIYKYLKEIIKNGMMPSGSKLPSSREMATMTTLSRNTIIRAYELLEEENLVYTKRGKGTFVSDIK
ISENNDWKIDWYSKINEYGKMSEDLDIMKTEALYKKGMISFKSIAPDEKLFDVEELKRAFLNRVSLEGEKILNYGYAKGY
KPLIDYLLEYMKEKGVNIKNKDILITNGFTEGFDIVLSSLLNEGDKIICENPTHNTAIKLMRLHKLDIVGVTIDDKGVDL
NQLENKLKNNQVKLSYVIPSYHNPTGRVMSFKRRKKFYEILKKYNVPIVEDGFNEELQHSGTHIAPIAAIAGEENSIIYI
GSLSKILFPGMRIGWILADKRLIDILESVKRSRNIHTSFLDQGILYEYMNSGAFEKYVKKVKTIYKEKYEYIMKLCKEEI
PNKYILGDGGLYIFIKLKNIKSRELLKACLKRKVIFTPGDMFFIDNEGEDTLRLGFSRNSLEEIEKGIKIIGEEARSILN
K

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=398, Percent_Identity=24.1206030150754, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI33469970, Length=398, Percent_Identity=24.1206030150754, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI56713254, Length=269, Percent_Identity=25.2788104089219, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI56713256, Length=269, Percent_Identity=25.2788104089219, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI1787710, Length=474, Percent_Identity=24.4725738396624, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1790797, Length=465, Percent_Identity=21.505376344086, Blast_Score=127, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6321236, Length=223, Percent_Identity=26.457399103139, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321000, Length=248, Percent_Identity=24.1935483870968, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21356535, Length=340, Percent_Identity=26.1764705882353, Blast_Score=103, Evalue=3e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 55564; Mature: 55564

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPIFNIKDGQIAYEEIYKYLKEIIKNGMMPSGSKLPSSREMATMTTLSRNTIIRAYELL
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EEENLVYTKRGKGTFVSDIKISENNDWKIDWYSKINEYGKMSEDLDIMKTEALYKKGMIS
CCCCEEEEECCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCH
FKSIAPDEKLFDVEELKRAFLNRVSLEGEKILNYGYAKGYKPLIDYLLEYMKEKGVNIKN
HHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
KDILITNGFTEGFDIVLSSLLNEGDKIICENPTHNTAIKLMRLHKLDIVGVTIDDKGVDL
CCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHEEEEEEEEEECCCCCCH
NQLENKLKNNQVKLSYVIPSYHNPTGRVMSFKRRKKFYEILKKYNVPIVEDGFNEELQHS
HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHC
GTHIAPIAAIAGEENSIIYIGSLSKILFPGMRIGWILADKRLIDILESVKRSRNIHTSFL
CCEEEEEHEECCCCCCEEEEECHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHH
DQGILYEYMNSGAFEKYVKKVKTIYKEKYEYIMKLCKEEIPNKYILGDGGLYIFIKLKNI
HCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCC
KSRELLKACLKRKVIFTPGDMFFIDNEGEDTLRLGFSRNSLEEIEKGIKIIGEEARSILN
CHHHHHHHHHHCCEEECCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
K
C
>Mature Secondary Structure
MFPIFNIKDGQIAYEEIYKYLKEIIKNGMMPSGSKLPSSREMATMTTLSRNTIIRAYELL
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
EEENLVYTKRGKGTFVSDIKISENNDWKIDWYSKINEYGKMSEDLDIMKTEALYKKGMIS
CCCCEEEEECCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCH
FKSIAPDEKLFDVEELKRAFLNRVSLEGEKILNYGYAKGYKPLIDYLLEYMKEKGVNIKN
HHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
KDILITNGFTEGFDIVLSSLLNEGDKIICENPTHNTAIKLMRLHKLDIVGVTIDDKGVDL
CCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHEEEEEEEEEECCCCCCH
NQLENKLKNNQVKLSYVIPSYHNPTGRVMSFKRRKKFYEILKKYNVPIVEDGFNEELQHS
HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHC
GTHIAPIAAIAGEENSIIYIGSLSKILFPGMRIGWILADKRLIDILESVKRSRNIHTSFL
CCEEEEEHEECCCCCCEEEEECHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHH
DQGILYEYMNSGAFEKYVKKVKTIYKEKYEYIMKLCKEEIPNKYILGDGGLYIFIKLKNI
HCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCC
KSRELLKACLKRKVIFTPGDMFFIDNEGEDTLRLGFSRNSLEEIEKGIKIIGEEARSILN
CHHHHHHHHHHCCEEECCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]