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The map label for this gene is ypsC [H]

Identifier: 28210173

GI number: 28210173

Start: 415386

End: 416528

Strand: Direct

Name: ypsC [H]

Synonym: CTC00420

Alternate gene names: 28210173

Gene position: 415386-416528 (Clockwise)

Preceding gene: 28210172

Following gene: 28210174

Centisome position: 14.84

GC content: 32.63

Gene sequence:

>1143_bases
ATGGATTATACATTAATTGCAACTGCCACTTTTGGATTAGAAAAAGTAGTAGCAGATGAGCTAAGAGAATTAGGTTATGA
GGATTTAATTATAGAGAACGGTAAAGTAACCTTTCAAGGAAGTGAAATGGATATAGTCACTTGTAACATGTGGCTTAGAA
CAGCAGATAGAGTTCTTATAAAAATGGCAGAATTCAAAGCAGAAAGCTTTGAAGAATTATTTCAAGGTACATTAAAAGTA
GAATGGGGAGACATTATTCCAGAAACAGGTTTTATGCACGTAACAGGAAAGTCTGTAAAATCAAAACTCTTTAGTGTACC
AGACTGTCAATCAATAACTAAAAAGGCAGTAGTTGAAAGCATGAAAAGGAAATATAATAAGGAAATGTTTTCAGAGGACG
GAGCTACTTATAAAATAGAAGTGGCTATTTTAAAGGACATAGTAACTCTAACTTTAGATACTACAGGACCAGGACTTCAT
AAAAGAGGATATAGGGAATTTGCAGGGGAAGCTCCATTAAAGGAAACTTTGGCAGCAGCTTTAGTGCTTTTAAGCAAATG
GGAACCTTCTAGAATATTAGCAGATCCTTTCTGTGGATCAGGAACTATCCCCATAGAAGCTGCTATGATAGGAAAAAATA
TAGCACCAGGGCTTAATAGAAATTTTGTATCAGAAGATTGGGATATAATACCTAAAAACTTATGGCAAGATATGAGAAAA
TATGCTAGAAACTCAATTAACGATAAAGAATTTAGAATATTAGCGTCAGATATAAATGGAAGAGTATTAAAAACAGCCAG
AGATAATGCCGAAAAAGCTGGAGTAGCAGATTATATAGCCTTTCAAAGGATGGATATGAAAGAATTTAGAAATAAAAAAA
GATATGGATTTATAATAACAAATCCACCCTATGGAGAAAGAATAGGAAACGCTAAAGAAGTAGAAAATTTATATGAAGAT
ATGGGAAGAACATTTCAAGAGCTAAAGGATTGGTCCTATTTTGTAATTACTTCCTATGAAGATTTTGAGAACTGTTTTGG
TGAAAAATCAGATAAGAATAGAAAACTGTATAATGGAAGAATAAAATGTTACTATTATCAATACTTTGGGGCAGAACCTG
AAAAAAATCCTTGGGAAAAATAA

Upstream 100 bases:

>100_bases
ATCTACATTAGGTGATGTAAAAGAGATTTCATAGGTTAAAATCATAAAAATAAGATATACTATAAGGTATAAAATCTAAA
GTATATGGGAGAGAAGAAAT

Downstream 100 bases:

>100_bases
ATATATTAATTTAAAAATAGGCTAACTAAAAAGGTTAGTCTGTTTTTATATGTAATATTTTATTGAAATTAATAAAAGTA
TAATTTTTGTTAAATTTTTT

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDYTLIATATFGLEKVVADELRELGYEDLIIENGKVTFQGSEMDIVTCNMWLRTADRVLIKMAEFKAESFEELFQGTLKV
EWGDIIPETGFMHVTGKSVKSKLFSVPDCQSITKKAVVESMKRKYNKEMFSEDGATYKIEVAILKDIVTLTLDTTGPGLH
KRGYREFAGEAPLKETLAAALVLLSKWEPSRILADPFCGSGTIPIEAAMIGKNIAPGLNRNFVSEDWDIIPKNLWQDMRK
YARNSINDKEFRILASDINGRVLKTARDNAEKAGVADYIAFQRMDMKEFRNKKRYGFIITNPPYGERIGNAKEVENLYED
MGRTFQELKDWSYFVITSYEDFENCFGEKSDKNRKLYNGRIKCYYYQYFGAEPEKNPWEK

Sequences:

>Translated_380_residues
MDYTLIATATFGLEKVVADELRELGYEDLIIENGKVTFQGSEMDIVTCNMWLRTADRVLIKMAEFKAESFEELFQGTLKV
EWGDIIPETGFMHVTGKSVKSKLFSVPDCQSITKKAVVESMKRKYNKEMFSEDGATYKIEVAILKDIVTLTLDTTGPGLH
KRGYREFAGEAPLKETLAAALVLLSKWEPSRILADPFCGSGTIPIEAAMIGKNIAPGLNRNFVSEDWDIIPKNLWQDMRK
YARNSINDKEFRILASDINGRVLKTARDNAEKAGVADYIAFQRMDMKEFRNKKRYGFIITNPPYGERIGNAKEVENLYED
MGRTFQELKDWSYFVITSYEDFENCFGEKSDKNRKLYNGRIKCYYYQYFGAEPEKNPWEK
>Mature_380_residues
MDYTLIATATFGLEKVVADELRELGYEDLIIENGKVTFQGSEMDIVTCNMWLRTADRVLIKMAEFKAESFEELFQGTLKV
EWGDIIPETGFMHVTGKSVKSKLFSVPDCQSITKKAVVESMKRKYNKEMFSEDGATYKIEVAILKDIVTLTLDTTGPGLH
KRGYREFAGEAPLKETLAAALVLLSKWEPSRILADPFCGSGTIPIEAAMIGKNIAPGLNRNFVSEDWDIIPKNLWQDMRK
YARNSINDKEFRILASDINGRVLKTARDNAEKAGVADYIAFQRMDMKEFRNKKRYGFIITNPPYGERIGNAKEVENLYED
MGRTFQELKDWSYFVITSYEDFENCFGEKSDKNRKLYNGRIKCYYYQYFGAEPEKNPWEK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=390, Percent_Identity=32.0512820512821, Blast_Score=195, Evalue=4e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43636; Mature: 43636

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYTLIATATFGLEKVVADELRELGYEDLIIENGKVTFQGSEMDIVTCNMWLRTADRVLI
CCEEEEEEEHHHHHHHHHHHHHHCCCHHEEEECCEEEEECCCEEEEEHHHHHHHHHHHHH
KMAEFKAESFEELFQGTLKVEWGDIIPETGFMHVTGKSVKSKLFSVPDCQSITKKAVVES
HHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECHHHHHHHCCCCCHHHHHHHHHHHH
MKRKYNKEMFSEDGATYKIEVAILKDIVTLTLDTTGPGLHKRGYREFAGEAPLKETLAAA
HHHHHHHHHHHCCCCEEEEEHHEECCEEEEEEECCCCCHHHCCHHHHCCCCCHHHHHHHH
LVLLSKWEPSRILADPFCGSGTIPIEAAMIGKNIAPGLNRNFVSEDWDIIPKNLWQDMRK
HHHHHCCCCCCEECCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YARNSINDKEFRILASDINGRVLKTARDNAEKAGVADYIAFQRMDMKEFRNKKRYGFIIT
HHHCCCCCCCEEEEEECCCCEEEEHHHCCHHHCCHHHHHHHHHCCHHHHCCCCCEEEEEC
NPPYGERIGNAKEVENLYEDMGRTFQELKDWSYFVITSYEDFENCFGEKSDKNRKLYNGR
CCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCEEECCE
IKCYYYQYFGAEPEKNPWEK
EEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MDYTLIATATFGLEKVVADELRELGYEDLIIENGKVTFQGSEMDIVTCNMWLRTADRVLI
CCEEEEEEEHHHHHHHHHHHHHHCCCHHEEEECCEEEEECCCEEEEEHHHHHHHHHHHHH
KMAEFKAESFEELFQGTLKVEWGDIIPETGFMHVTGKSVKSKLFSVPDCQSITKKAVVES
HHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECHHHHHHHCCCCCHHHHHHHHHHHH
MKRKYNKEMFSEDGATYKIEVAILKDIVTLTLDTTGPGLHKRGYREFAGEAPLKETLAAA
HHHHHHHHHHHCCCCEEEEEHHEECCEEEEEEECCCCCHHHCCHHHHCCCCCHHHHHHHH
LVLLSKWEPSRILADPFCGSGTIPIEAAMIGKNIAPGLNRNFVSEDWDIIPKNLWQDMRK
HHHHHCCCCCCEECCCCCCCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
YARNSINDKEFRILASDINGRVLKTARDNAEKAGVADYIAFQRMDMKEFRNKKRYGFIIT
HHHCCCCCCCEEEEEECCCCEEEEHHHCCHHHCCHHHHHHHHHCCHHHHCCCCCEEEEEC
NPPYGERIGNAKEVENLYEDMGRTFQELKDWSYFVITSYEDFENCFGEKSDKNRKLYNGR
CCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCEEECCE
IKCYYYQYFGAEPEKNPWEK
EEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]