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The map label for this gene is ydcI [H]

Identifier: 28210090

GI number: 28210090

Start: 315916

End: 318072

Strand: Direct

Name: ydcI [H]

Synonym: CTC00330

Alternate gene names: 28210090

Gene position: 315916-318072 (Clockwise)

Preceding gene: 28210088

Following gene: 28210091

Centisome position: 11.29

GC content: 30.37

Gene sequence:

>2157_bases
ATGATTGATATAAAAGAGAGATTAGCAAAAGAATTAAATATAAGTATAAAACAGGTAGAGAGTACAGTAAATCTATTAGA
TGAAGGGAATACTATACCCTTTATAGCAAGATATAGAAAAGAAGTAACAGGTGGATTAACGGATTTAACACTAAGAGAAT
TATTTCAAAGACTAACATATCTAAGAAATTTAAATGGAAAAAAAGAAGATGTAATGAGAATAATAGATGAACAAGGAAAA
TTAACAGAAGATTTAAAGTCAAGTATATTAAAGTGTGAAACTCTCACAGAAGTAGAAGATATTTATAGACCTTTTAGACC
TAAAAGAAGGACTAGAGCCACTATTGCAGAAGAAAAGGGTCTTAAACCTTTAGCTGAGTTAATATTATTAGGAGAATTTA
AAGAAGATTTAAAAGAAGAAGCAGGAAAATATATTAATAATGAAAAAGAAGTAAATTCTTCAGAAGAGGCTTTAGCAGGA
GCAGTTGATATAATAAGTGAAATAATATCTGATAAAGCAGAATATAGAAAATGGATTAGAAGTTTTGTTAATAAAGAGGG
ATTAATAGAAACCTCAGGGGAAAGTAAAGAACCAACTCCTTATGAGATGTATTATTCCTATAGAGAGGAAGTTAAAAAAA
TACCTTCTCATAGAATTTTAGCTATTAACAGGGGAGAAAAAGAGAAAATATTATCTGTTAAAATAACTTGTGATATGGGA
AAAATAGAAATATATTTGAAAAGCAATTTATTAAAAGATAATAATATAACCGATAAATATATTGAAGAGAGTGTTTCAGA
TTCATTAAAAAGACTTATATATCCTTCCATAGAAAGAGAAATAAGAGGAGATCTTACAGATAGGGCAGAAAAAGGAGCTA
TTGATATATTCAAATCTAATTTAAAAGCTCTGCTTATGCAACCACCAATAAAGGGAAAAACTGTATTAGGATATGATCCA
GGTTTTAGAACCGGGTGTAAAATAGCTGTATTAGATGATACAGGAAAGTTTTTAGATAAGTCTACAGTTTATGCTACAGC
ACCACAAAATGATGTAGAAGGCTCTATAAAAGCATTAAAAGAGCTTATTTATAAATATGATGTAGATGTAATATCATTAG
GCAATGGAACAGCTAGTAGAGAATCTGAAGAAGTTATTGGAAGGCTTATAAAAGAAATAAAGGAGGAAAAAGGTAAGGAG
GTATATTATGTAATAGTTTCTGAAGCAGGAGCTTCTGTATACTCAGCTTCAGAACTTGCAACAGAAGAATATCCAGATAT
AGATGTATCCATAAGAGGAGCCATATCTATAGGAAGAAGGCTTCAAGATCCTTTAGCGGAACTTGTTAAAATAGATCCTA
AGTCCATAGGAGTAGGGCAATATCAGCACGATATTACTCCTAAGAAATTAGATGAATCTCTAAGAGGTGTGGTAGAGGAT
TGTGTAAATAATGTAGGAGTGGATTTAAATACAGCAACACCTTCACTATTAGCGTACGTTTCTGGAATAAACTCTGGAAT
AGCTAAAAATATTGTTGCATATAGAGAAGAAAAGGGTAAATTTACAAGCAGAAAAGAATTACTAAAGGTAAAAAGATTAG
GAGCAAAAGCCTTTGAGCAATGTGCAGGTTTTTTAAGAGTAAGTGAAAGTAAGGAACTTCTTGATAATACAGGAGTACAT
CCAGAATCTTATAAAGTAACTAAAGAACTTATAAAGACATTAAATTATTCTGCTAATGATTTAAAGTGTAACAAATTAGA
GGATATAGATGGAAGAATAAAAAATAGTGATATAGATGAGTTAGCTAAAAATTTAGATATTGGAAAACCTACACTTTTAG
ATATAATAAAAGAACTTAAAAAGCCAGGAAGAGATCCAAGAGAAGATTTACCAAAGCCTATATTTAAAACAGGAGTTATA
GATATAAATCAATTAAAACCTGGTATGGCACTTACTGGAACAGTAAGAAATGTTGCAGACTTTGGAGCTTTTGTTGATAT
AGGAGTACATCAAGATGGATTAGTGCACATAAGTGAGTTATCAGATAAATTTGTTAAACATCCTTTAGACGTAGTAAAAG
TAGGAGATATAGTAGATGTTAGGGTTTTAGAGGTAGATGAAAAGAGAGGACGAATATCTTTAAGCATGAAACAGTAA

Upstream 100 bases:

>100_bases
TCCTTTAAAGTACTTACCTTATAAAATATATTAAAAATAAAGGAGTTATATAACTTAAGGTAGAATTTTTATAAAACTAA
GTATGGAGGTCGATTAGTAA

Downstream 100 bases:

>100_bases
TTCTTAAAATAAAAATTTTGCACAACAAAATTTTTATTTTAAGAATAATGAACAATTAATGAACAATTTAGGTGGATTTT
CTTCCACTATGTTACAGAAA

Product: transcription accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MIDIKERLAKELNISIKQVESTVNLLDEGNTIPFIARYRKEVTGGLTDLTLRELFQRLTYLRNLNGKKEDVMRIIDEQGK
LTEDLKSSILKCETLTEVEDIYRPFRPKRRTRATIAEEKGLKPLAELILLGEFKEDLKEEAGKYINNEKEVNSSEEALAG
AVDIISEIISDKAEYRKWIRSFVNKEGLIETSGESKEPTPYEMYYSYREEVKKIPSHRILAINRGEKEKILSVKITCDMG
KIEIYLKSNLLKDNNITDKYIEESVSDSLKRLIYPSIEREIRGDLTDRAEKGAIDIFKSNLKALLMQPPIKGKTVLGYDP
GFRTGCKIAVLDDTGKFLDKSTVYATAPQNDVEGSIKALKELIYKYDVDVISLGNGTASRESEEVIGRLIKEIKEEKGKE
VYYVIVSEAGASVYSASELATEEYPDIDVSIRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDITPKKLDESLRGVVED
CVNNVGVDLNTATPSLLAYVSGINSGIAKNIVAYREEKGKFTSRKELLKVKRLGAKAFEQCAGFLRVSESKELLDNTGVH
PESYKVTKELIKTLNYSANDLKCNKLEDIDGRIKNSDIDELAKNLDIGKPTLLDIIKELKKPGRDPREDLPKPIFKTGVI
DINQLKPGMALTGTVRNVADFGAFVDIGVHQDGLVHISELSDKFVKHPLDVVKVGDIVDVRVLEVDEKRGRISLSMKQ

Sequences:

>Translated_718_residues
MIDIKERLAKELNISIKQVESTVNLLDEGNTIPFIARYRKEVTGGLTDLTLRELFQRLTYLRNLNGKKEDVMRIIDEQGK
LTEDLKSSILKCETLTEVEDIYRPFRPKRRTRATIAEEKGLKPLAELILLGEFKEDLKEEAGKYINNEKEVNSSEEALAG
AVDIISEIISDKAEYRKWIRSFVNKEGLIETSGESKEPTPYEMYYSYREEVKKIPSHRILAINRGEKEKILSVKITCDMG
KIEIYLKSNLLKDNNITDKYIEESVSDSLKRLIYPSIEREIRGDLTDRAEKGAIDIFKSNLKALLMQPPIKGKTVLGYDP
GFRTGCKIAVLDDTGKFLDKSTVYATAPQNDVEGSIKALKELIYKYDVDVISLGNGTASRESEEVIGRLIKEIKEEKGKE
VYYVIVSEAGASVYSASELATEEYPDIDVSIRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDITPKKLDESLRGVVED
CVNNVGVDLNTATPSLLAYVSGINSGIAKNIVAYREEKGKFTSRKELLKVKRLGAKAFEQCAGFLRVSESKELLDNTGVH
PESYKVTKELIKTLNYSANDLKCNKLEDIDGRIKNSDIDELAKNLDIGKPTLLDIIKELKKPGRDPREDLPKPIFKTGVI
DINQLKPGMALTGTVRNVADFGAFVDIGVHQDGLVHISELSDKFVKHPLDVVKVGDIVDVRVLEVDEKRGRISLSMKQ
>Mature_718_residues
MIDIKERLAKELNISIKQVESTVNLLDEGNTIPFIARYRKEVTGGLTDLTLRELFQRLTYLRNLNGKKEDVMRIIDEQGK
LTEDLKSSILKCETLTEVEDIYRPFRPKRRTRATIAEEKGLKPLAELILLGEFKEDLKEEAGKYINNEKEVNSSEEALAG
AVDIISEIISDKAEYRKWIRSFVNKEGLIETSGESKEPTPYEMYYSYREEVKKIPSHRILAINRGEKEKILSVKITCDMG
KIEIYLKSNLLKDNNITDKYIEESVSDSLKRLIYPSIEREIRGDLTDRAEKGAIDIFKSNLKALLMQPPIKGKTVLGYDP
GFRTGCKIAVLDDTGKFLDKSTVYATAPQNDVEGSIKALKELIYKYDVDVISLGNGTASRESEEVIGRLIKEIKEEKGKE
VYYVIVSEAGASVYSASELATEEYPDIDVSIRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDITPKKLDESLRGVVED
CVNNVGVDLNTATPSLLAYVSGINSGIAKNIVAYREEKGKFTSRKELLKVKRLGAKAFEQCAGFLRVSESKELLDNTGVH
PESYKVTKELIKTLNYSANDLKCNKLEDIDGRIKNSDIDELAKNLDIGKPTLLDIIKELKKPGRDPREDLPKPIFKTGVI
DINQLKPGMALTGTVRNVADFGAFVDIGVHQDGLVHISELSDKFVKHPLDVVKVGDIVDVRVLEVDEKRGRISLSMKQ

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=793, Percent_Identity=33.1651954602774, Blast_Score=403, Evalue=1e-112,
Organism=Homo sapiens, GI27597090, Length=754, Percent_Identity=21.8832891246684, Blast_Score=97, Evalue=6e-20,
Organism=Escherichia coli, GI87082262, Length=724, Percent_Identity=47.2375690607735, Blast_Score=615, Evalue=1e-177,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=48.0519480519481, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI145693187, Length=75, Percent_Identity=48, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=760, Percent_Identity=33.6842105263158, Blast_Score=319, Evalue=3e-87,
Organism=Caenorhabditis elegans, GI17552892, Length=293, Percent_Identity=25.5972696245734, Blast_Score=79, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321552, Length=214, Percent_Identity=26.6355140186916, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI62484314, Length=787, Percent_Identity=32.4015247776366, Blast_Score=390, Evalue=1e-108,
Organism=Drosophila melanogaster, GI24640080, Length=649, Percent_Identity=20.8012326656394, Blast_Score=86, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80550; Mature: 80550

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIKERLAKELNISIKQVESTVNLLDEGNTIPFIARYRKEVTGGLTDLTLRELFQRLTY
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LRNLNGKKEDVMRIIDEQGKLTEDLKSSILKCETLTEVEDIYRPFRPKRRTRATIAEEKG
HHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
LKPLAELILLGEFKEDLKEEAGKYINNEKEVNSSEEALAGAVDIISEIISDKAEYRKWIR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
SFVNKEGLIETSGESKEPTPYEMYYSYREEVKKIPSHRILAINRGEKEKILSVKITCDMG
HHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCC
KIEIYLKSNLLKDNNITDKYIEESVSDSLKRLIYPSIEREIRGDLTDRAEKGAIDIFKSN
EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHCCHHHHHHHH
LKALLMQPPIKGKTVLGYDPGFRTGCKIAVLDDTGKFLDKSTVYATAPQNDVEGSIKALK
HHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHCCCCEEEECCCCCCHHHHHHHH
ELIYKYDVDVISLGNGTASRESEEVIGRLIKEIKEEKGKEVYYVIVSEAGASVYSASELA
HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHH
TEEYPDIDVSIRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDITPKKLDESLRGVVED
HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHH
CVNNVGVDLNTATPSLLAYVSGINSGIAKNIVAYREEKGKFTSRKELLKVKRLGAKAFEQ
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
CAGFLRVSESKELLDNTGVHPESYKVTKELIKTLNYSANDLKCNKLEDIDGRIKNSDIDE
HHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
LAKNLDIGKPTLLDIIKELKKPGRDPREDLPKPIFKTGVIDINQLKPGMALTGTVRNVAD
HHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCEEHHHCCCCCEEHHHHHHHHH
FGAFVDIGVHQDGLVHISELSDKFVKHPLDVVKVGDIVDVRVLEVDEKRGRISLSMKQ
HCCEEEECCCCCCCEEHHHHHHHHHHCCHHHEEECCEEEEEEEEECCCCCCEEEEECC
>Mature Secondary Structure
MIDIKERLAKELNISIKQVESTVNLLDEGNTIPFIARYRKEVTGGLTDLTLRELFQRLTY
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LRNLNGKKEDVMRIIDEQGKLTEDLKSSILKCETLTEVEDIYRPFRPKRRTRATIAEEKG
HHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
LKPLAELILLGEFKEDLKEEAGKYINNEKEVNSSEEALAGAVDIISEIISDKAEYRKWIR
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
SFVNKEGLIETSGESKEPTPYEMYYSYREEVKKIPSHRILAINRGEKEKILSVKITCDMG
HHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCC
KIEIYLKSNLLKDNNITDKYIEESVSDSLKRLIYPSIEREIRGDLTDRAEKGAIDIFKSN
EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHCCHHHHHHHH
LKALLMQPPIKGKTVLGYDPGFRTGCKIAVLDDTGKFLDKSTVYATAPQNDVEGSIKALK
HHHHHCCCCCCCCEEEECCCCCCCCCEEEEECCCCCHHCCCCEEEECCCCCCHHHHHHHH
ELIYKYDVDVISLGNGTASRESEEVIGRLIKEIKEEKGKEVYYVIVSEAGASVYSASELA
HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHH
TEEYPDIDVSIRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDITPKKLDESLRGVVED
HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHH
CVNNVGVDLNTATPSLLAYVSGINSGIAKNIVAYREEKGKFTSRKELLKVKRLGAKAFEQ
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
CAGFLRVSESKELLDNTGVHPESYKVTKELIKTLNYSANDLKCNKLEDIDGRIKNSDIDE
HHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
LAKNLDIGKPTLLDIIKELKKPGRDPREDLPKPIFKTGVIDINQLKPGMALTGTVRNVAD
HHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCEEHHHCCCCCEEHHHHHHHHH
FGAFVDIGVHQDGLVHISELSDKFVKHPLDVVKVGDIVDVRVLEVDEKRGRISLSMKQ
HCCEEEECCCCCCCEEHHHHHHHHHHCCHHHEEECCEEEEEEEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]