| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is gamP [H]
Identifier: 28210041
GI number: 28210041
Start: 258330
End: 260339
Strand: Direct
Name: gamP [H]
Synonym: CTC00278
Alternate gene names: 28210041
Gene position: 258330-260339 (Clockwise)
Preceding gene: 28210040
Following gene: 28210042
Centisome position: 9.23
GC content: 32.29
Gene sequence:
>2010_bases ATGAAAAAGCTATTTAGTATATTACAAAAGATAGGTAAATCTCTAATGCTTCCCGTGTCAGTATTGCCTGCAGCGGGAAT ACTTTTAAGATTAGGGCAGCCGGATCTTTTAAATATGCCATATTTAGCTACAGCAGGAGATGCCATATTTACAAATCTTC CAATGATTTTTGCAGTTGGTGTAGCTATTGGATTTTCAGGAGGAGAGGGAACGGCAGCTTTGGCAGCGGTAGTAGGTCAA TTTATTCTACAAGGAATAATTAAAGTTGCTGGAGATAATTTTGCTCAAATTGCAGCAGAGCAAATAGCCAAAGCTCAGGG AATGGCATTTGACATATTTAAAAATTCAGCGGAGTATACTGAGATAGTAAGATTAAATCAAATAAATATGGGGGTATTCG GCGGTATTATAATAGGATTGACAGCAGCGATTTTATATAATAAATATCATAATATAAAACTACCACAAGCTTTGGGTTTT TTTGCAGGTAAGAGGTTTGTCCCTATAGTTACTTCTATTGCATCATTAATTATTGCAATTATAGGGGTTAAGGTTTGGCC GGAACTACAAAAGGGTATAGATGTGTTTGCACGTTGGGCTAGCACCTCTCCCTATGGTCCAGCTCTTTATGCATCTGGAA AAAGGCTACTTATACCTGTAGGACTTCATCATATGTACTATCCACCGTTCTTATACCAGTTTGGAGAATATGTAGTAGAT GGGGTATCTTATTTAGGAGATTTTGCAAGATTTTATCATGGAGATCCTAGCGCAGGTATATTTATGGCATCAGAATATCC TAATATAATGTTTGGACTTCCAGGAGCAGCTCTGGCAATGGTTCTTACTGCTAAGAAAGAAAATAGAAAAGCAGTGGCAG GAATGATGGCATCAGCAGCATTAGTTGCTTTTGTTACCGGGATAACAGAACCAATTGAATTTTCGTTTATATTTGTTGCA CCAATGTTATTTGTGTTTCATGTTTTAGCAGCTTTTATAGGAGGATTAGTAACAAAAATTTTAGATATAAGATTAGGATA TACATTTTCAGCTTCTGCAATAGATTATATATTAGGTTTTAAATTTACTGGAAATGCTCTATTAATTTGGCCTGTAGGAA TAGCATTTTTTATTTTATATTTTGTAGTTTTTTATTTTGTAATAAAGAAATTTAATATTAAAACACCTGGTAGAGAAGAC AATAAAGCATCAAAAGAACAATTTATAATTAAGGATTTAAAAAGGGATGATAGAGCATTTAAAGTTTTAGAGGCTTTAGG TGGAAAAAATAATATAAAAGAATTAGATGCTTGTATGACAAGGCTTAGATTAAATTTAGTAGATACTTCAAAGGTGGATA AAAATACACTTAAAGCTTTAGGATCAGCTGGAGTAATGGAGGCCGGAAATAGTGTTCAAGTAATATTTGGAACAGATGCA GAAAGAATAAAGGATGATATTAAAAATGTTATTAATAATTCATATGAGCCTTTAGAAGAAAAAGAGAATTATAATGAAAA AGAAGATTTCAAAGATGACCTCAAAAAAAATAATATAAAAGAAGAAATTATTTTAACACCAATAGAAGGTGAAGTAGTAG AATTAGAAAAAGTTCCAGATGAGGTTTTTTCTAAAAAAATGCTGGGGGATGGTTTTGCTGTAGAAATAAAAGGAGATAAG GTCTATGCTCCAATAGAGGGAGAGATATCTGTTATATTCCCAACAAAACATGCTATTGCAATAACCACAAATAATGGTCT AGAAATATTAATTCACGTTGGTATAGATACTGTTGAACTTCAAGGTGAAGGTTTTATTTCTCATGTTAAACAAGGTGATA CAGTTAAAAAAGGAGATCTTCTATTAACTGTAGATAAAGAGTTTATAAAAAATAAGGGAAAAAGCCTAATGACTCCTGTT ATAGTAACTAATATGGAGAAAGTAGAATCAATAGAAATATTTAAGGGACAAAACACAAATAAAAAAGCTGCTAATGTAAA AATAAAATAG
Upstream 100 bases:
>100_bases TCCAATTAGTAGAAGATATAGTTACTATATTCACTAACTTTGGTATAGAATCAGAGATACTCGTGTTTTGTTTTAAAAAA ATAATATAGGAGGAATACCA
Downstream 100 bases:
>100_bases TATATAATATTATAATTTAAGGTTGCTATTCATTAAGCAAAATAGCAATCTTTTTGTATCATCCTATATTTTTATTCATA TTATAGAATTAAAATAATAT
Product: PTS system, glucose-specific IIABC component
Products: NA
Alternate protein names: Glucosamine permease IIC component; PTS system glucosamine-specific EIIC component; Glucosamine-specific phosphotransferase enzyme IIB component; PTS system glucosamine-specific EIIB component; Glucosamine-specific phosphotransferase enzyme IIA component; PTS system glucosamine-specific EIIA component [H]
Number of amino acids: Translated: 669; Mature: 669
Protein sequence:
>669_residues MKKLFSILQKIGKSLMLPVSVLPAAGILLRLGQPDLLNMPYLATAGDAIFTNLPMIFAVGVAIGFSGGEGTAALAAVVGQ FILQGIIKVAGDNFAQIAAEQIAKAQGMAFDIFKNSAEYTEIVRLNQINMGVFGGIIIGLTAAILYNKYHNIKLPQALGF FAGKRFVPIVTSIASLIIAIIGVKVWPELQKGIDVFARWASTSPYGPALYASGKRLLIPVGLHHMYYPPFLYQFGEYVVD GVSYLGDFARFYHGDPSAGIFMASEYPNIMFGLPGAALAMVLTAKKENRKAVAGMMASAALVAFVTGITEPIEFSFIFVA PMLFVFHVLAAFIGGLVTKILDIRLGYTFSASAIDYILGFKFTGNALLIWPVGIAFFILYFVVFYFVIKKFNIKTPGRED NKASKEQFIIKDLKRDDRAFKVLEALGGKNNIKELDACMTRLRLNLVDTSKVDKNTLKALGSAGVMEAGNSVQVIFGTDA ERIKDDIKNVINNSYEPLEEKENYNEKEDFKDDLKKNNIKEEIILTPIEGEVVELEKVPDEVFSKKMLGDGFAVEIKGDK VYAPIEGEISVIFPTKHAIAITTNNGLEILIHVGIDTVELQGEGFISHVKQGDTVKKGDLLLTVDKEFIKNKGKSLMTPV IVTNMEKVESIEIFKGQNTNKKAANVKIK
Sequences:
>Translated_669_residues MKKLFSILQKIGKSLMLPVSVLPAAGILLRLGQPDLLNMPYLATAGDAIFTNLPMIFAVGVAIGFSGGEGTAALAAVVGQ FILQGIIKVAGDNFAQIAAEQIAKAQGMAFDIFKNSAEYTEIVRLNQINMGVFGGIIIGLTAAILYNKYHNIKLPQALGF FAGKRFVPIVTSIASLIIAIIGVKVWPELQKGIDVFARWASTSPYGPALYASGKRLLIPVGLHHMYYPPFLYQFGEYVVD GVSYLGDFARFYHGDPSAGIFMASEYPNIMFGLPGAALAMVLTAKKENRKAVAGMMASAALVAFVTGITEPIEFSFIFVA PMLFVFHVLAAFIGGLVTKILDIRLGYTFSASAIDYILGFKFTGNALLIWPVGIAFFILYFVVFYFVIKKFNIKTPGRED NKASKEQFIIKDLKRDDRAFKVLEALGGKNNIKELDACMTRLRLNLVDTSKVDKNTLKALGSAGVMEAGNSVQVIFGTDA ERIKDDIKNVINNSYEPLEEKENYNEKEDFKDDLKKNNIKEEIILTPIEGEVVELEKVPDEVFSKKMLGDGFAVEIKGDK VYAPIEGEISVIFPTKHAIAITTNNGLEILIHVGIDTVELQGEGFISHVKQGDTVKKGDLLLTVDKEFIKNKGKSLMTPV IVTNMEKVESIEIFKGQNTNKKAANVKIK >Mature_669_residues MKKLFSILQKIGKSLMLPVSVLPAAGILLRLGQPDLLNMPYLATAGDAIFTNLPMIFAVGVAIGFSGGEGTAALAAVVGQ FILQGIIKVAGDNFAQIAAEQIAKAQGMAFDIFKNSAEYTEIVRLNQINMGVFGGIIIGLTAAILYNKYHNIKLPQALGF FAGKRFVPIVTSIASLIIAIIGVKVWPELQKGIDVFARWASTSPYGPALYASGKRLLIPVGLHHMYYPPFLYQFGEYVVD GVSYLGDFARFYHGDPSAGIFMASEYPNIMFGLPGAALAMVLTAKKENRKAVAGMMASAALVAFVTGITEPIEFSFIFVA PMLFVFHVLAAFIGGLVTKILDIRLGYTFSASAIDYILGFKFTGNALLIWPVGIAFFILYFVVFYFVIKKFNIKTPGRED NKASKEQFIIKDLKRDDRAFKVLEALGGKNNIKELDACMTRLRLNLVDTSKVDKNTLKALGSAGVMEAGNSVQVIFGTDA ERIKDDIKNVINNSYEPLEEKENYNEKEDFKDDLKKNNIKEEIILTPIEGEVVELEKVPDEVFSKKMLGDGFAVEIKGDK VYAPIEGEISVIFPTKHAIAITTNNGLEILIHVGIDTVELQGEGFISHVKQGDTVKKGDLLLTVDKEFIKNKGKSLMTPV IVTNMEKVESIEIFKGQNTNKKAANVKIK
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1263
COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786894, Length=673, Percent_Identity=38.7815750371471, Blast_Score=431, Evalue=1e-121, Organism=Escherichia coli, GI1787343, Length=505, Percent_Identity=42.5742574257426, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI1787908, Length=531, Percent_Identity=32.015065913371, Blast_Score=245, Evalue=8e-66, Organism=Escherichia coli, GI1788757, Length=158, Percent_Identity=40.5063291139241, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1790159, Length=123, Percent_Identity=43.9024390243902, Blast_Score=108, Evalue=9e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR018113 - InterPro: IPR001127 - InterPro: IPR001996 - InterPro: IPR003352 - InterPro: IPR013013 - InterPro: IPR011535 - InterPro: IPR011299 [H]
Pfam domain/function: PF00358 PTS_EIIA_1; PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 73239; Mature: 73239
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: PS00371 PTS_EIIA_TYPE_1_HIS ; PS51093 PTS_EIIA_TYPE_1 ; PS01035 PTS_EIIB_TYPE_1_CYS ; PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLFSILQKIGKSLMLPVSVLPAAGILLRLGQPDLLNMPYLATAGDAIFTNLPMIFAVG CHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCHHCCCCHHHHCCHHHHHHH VAIGFSGGEGTAALAAVVGQFILQGIIKVAGDNFAQIAAEQIAKAQGMAFDIFKNSAEYT HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCCHHH EIVRLNQINMGVFGGIIIGLTAAILYNKYHNIKLPQALGFFAGKRFVPIVTSIASLIIAI HHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH IGVKVWPELQKGIDVFARWASTSPYGPALYASGKRLLIPVGLHHMYYPPFLYQFGEYVVD HHHHHCHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECHHHHCCCHHHHHHHHHHHH GVSYLGDFARFYHGDPSAGIFMASEYPNIMFGLPGAALAMVLTAKKENRKAVAGMMASAA HHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHH LVAFVTGITEPIEFSFIFVAPMLFVFHVLAAFIGGLVTKILDIRLGYTFSASAIDYILGF HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHEE KFTGNALLIWPVGIAFFILYFVVFYFVIKKFNIKTPGREDNKASKEQFIIKDLKRDDRAF EEECCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHH KVLEALGGKNNIKELDACMTRLRLNLVDTSKVDKNTLKALGSAGVMEAGNSVQVIFGTDA HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHCCCCEEEEEECCCH ERIKDDIKNVINNSYEPLEEKENYNEKEDFKDDLKKNNIKEEIILTPIEGEVVELEKVPD HHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHCCH EVFSKKMLGDGFAVEIKGDKVYAPIEGEISVIFPTKHAIAITTNNGLEILIHVGIDTVEL HHHHHHHCCCCEEEEEECCEEEECCCCCEEEEEECCEEEEEEECCCEEEEEEECCEEEEE QGEGFISHVKQGDTVKKGDLLLTVDKEFIKNKGKSLMTPVIVTNMEKVESIEIFKGQNTN CCCHHHHHHCCCCCEECCCEEEEECHHHHHCCCCCCCCHHHHCCHHHHHHEEEEECCCCC KKAANVKIK CCCCCCEEC >Mature Secondary Structure MKKLFSILQKIGKSLMLPVSVLPAAGILLRLGQPDLLNMPYLATAGDAIFTNLPMIFAVG CHHHHHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCHHCCCCHHHHCCHHHHHHH VAIGFSGGEGTAALAAVVGQFILQGIIKVAGDNFAQIAAEQIAKAQGMAFDIFKNSAEYT HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCCCCHHH EIVRLNQINMGVFGGIIIGLTAAILYNKYHNIKLPQALGFFAGKRFVPIVTSIASLIIAI HHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH IGVKVWPELQKGIDVFARWASTSPYGPALYASGKRLLIPVGLHHMYYPPFLYQFGEYVVD HHHHHCHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECHHHHCCCHHHHHHHHHHHH GVSYLGDFARFYHGDPSAGIFMASEYPNIMFGLPGAALAMVLTAKKENRKAVAGMMASAA HHHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHH LVAFVTGITEPIEFSFIFVAPMLFVFHVLAAFIGGLVTKILDIRLGYTFSASAIDYILGF HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHEE KFTGNALLIWPVGIAFFILYFVVFYFVIKKFNIKTPGREDNKASKEQFIIKDLKRDDRAF EEECCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHH KVLEALGGKNNIKELDACMTRLRLNLVDTSKVDKNTLKALGSAGVMEAGNSVQVIFGTDA HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHCCCCEEEEEECCCH ERIKDDIKNVINNSYEPLEEKENYNEKEDFKDDLKKNNIKEEIILTPIEGEVVELEKVPD HHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHCCH EVFSKKMLGDGFAVEIKGDKVYAPIEGEISVIFPTKHAIAITTNNGLEILIHVGIDTVEL HHHHHHHCCCCEEEEEECCEEEECCCCCEEEEEECCEEEEEEECCCEEEEEEECCEEEEE QGEGFISHVKQGDTVKKGDLLLTVDKEFIKNKGKSLMTPVIVTNMEKVESIEIFKGQNTN CCCHHHHHHCCCCCEECCCEEEEECHHHHHCCCCCCCCHHHHCCHHHHHHEEEEECCCCC KKAANVKIK CCCCCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 7751298 [H]