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The map label for this gene is nrdD [H]

Identifier: 28210021

GI number: 28210021

Start: 224794

End: 226908

Strand: Direct

Name: nrdD [H]

Synonym: CTC00257

Alternate gene names: 28210021

Gene position: 224794-226908 (Clockwise)

Preceding gene: 28210018

Following gene: 28210022

Centisome position: 8.03

GC content: 30.35

Gene sequence:

>2115_bases
ATGCTATATGTTGTAAAAAGAGATGGGAGAAGGGCTTCTTTTAATTCTATAAAGATAGCTAATGCAATTAAAAGAGCTTC
AGAAGAAATAGGCTTTGAGTTAAAAGAGAGCGAATTTATGAACTTAACTCAAAATGTAATAAAAGTGTTAGAAAAATCAG
TTAAAGATGAAATTACAGTTGAAGAGATTCAAAATTTAGTTGAAAGAACTTTAATGGAAAATAACTATAAAAACATAGGA
AGAGCCTATGCCAATTATAGACAGGAAAGAACTAGAATAAGAGAGATAAAGTCAGATTTAATGAAAGCTATAGAAAAAAT
AGGAATTGAGACAGATAGAGATAATGCTAATGTTGGTAATAACTTCTCGTCAAAATTATTAAGAATAGCTAGCGAATCTA
ATAAATGGCATAACTTGTTTAATATGCCTAAACATCTAGCTAAAGCTCATGAAAATGGAGATATATATTATCATGATTTA
GATAGCTATAACCTAACAGTGAATTGTTTACATATACCTACTAAAGAAATTTTGTCCAAAGGGTTTAACACAGGATACGG
ATTTATAAGACCTCCTAAAAGAATAGAATCTGCTTGTGAATTATCATGTATATTATTACAATCAACTCAAAATGATATGT
TTGGTGGACAATCTCATCCAGACTTTGATAATGATATGGGATACTTTGTTGAGTCCACAAGAAAAGAGATAAAAGAAGGA
TTAAGAGAGATCGGGTTAGAAGAACAAAAAATTGAAGAGATATGTGAGAGAAGATTAAGAAAAAGTATAAGTCAAGCAAT
GCAAGGGATAGTATATAATCTTAATACTATGCATTCAAGAGCTGGTTCACAAGTGCCTTTTAGCTCAATAAATATAGGAA
TACCAATGTCAGAGGATGCAGCTTTAGTTTGTGAGTTATTCCTAATAGAATATGAAAAAGGATTAGGTAAAGGAGAACAG
CCAATATTTCCTAATATAATATTTAGAGTAAAGGATGGAGTAAATAAGAAACCATCAGATCCATACTACAATTTATTTAA
ATTAGCTTGTAGAGTTGCTAGTAAAAGAATGAATCCTACTTTCATGAATATTGATGCAGATTTTAATTTGGAATATTATA
ATAAAGGATACTTACCTGCTACCATGGGATGTAGGACTAGAGTACAATCTAACATAAACGGAGAACCTGATGTTAAAGGA
AGGGGAAATATAGCGCCAACTACAATTAATTTACCAAGGTTGGGTATTATATCCAAAGGAGATATAAATAAATTCTTTGA
ATTATTAGATAATAGGCTAGACATGGTAAAGGAAGCATTACTACATAGATATGAAATATTAAAAAGACTAAGAATTAAAG
ATTTACCTTTTGTTGCAGGACAAAATTTAATGAAGGGATCAGAGAATTTACAGCCAGAAGATAGCATAGAACCTATTTTA
AGGCAAGGGACTTGGGGTATAGGATTTATAGGATTAGCTGAAACTCTTAAGGCATTAATAGGTAAGCATCATGGAGAGTC
AGAAAAAGCTAGAGAACTAGGACTAAAAATAATAAAGCATATAAGGGAATTTACTGATAAAATCACAGAAGAGACAAAGT
TAAATTGGTCTTGCTATGCAACACCAGCAGAAGGATTAAGCGGAAAGTTTATAGTGCAGGATAAGAAAATATTTGGTGAA
ATTAAAGGTGTAACAGATAAGGAGTACTATACTAATAGTTTTCATATACCAGTAGGATATCAAATATCAATAAAGGCGAA
AATAGACATAGAAGCTCCGTATCATTCCATTTGTAATGGAGGTCATATTTCCTATATAGAACTAGACGATTATCCAACAG
ATGATATAATAATGGATATAATAGATTATGCCTATAGTCAAACTAATATTAATTATTTAGGAATAAACTTTCATATAAAA
TATTGTAAAAATTGTGGTACTTATATAGATAACCATGAGTCAAGTTGTTTTCAATGCGGAAGTAAAAATATACAAGGAGT
ATCAAGAGTTACAGGATATTTAAGCTTAGATGAAAGATTTGGAGTTGGAAAAGCAGGGGAAAGAAAAGATAGATTATCAC
ATACAAATGGTAAAGCATTTTATGAAATGAGGTAA

Upstream 100 bases:

>100_bases
TAACACATATAATATGTAATTTTGTAAGTTGATTTTATGATATTCACATAGTATAATTACCAAAGTATATACAATATATT
GTAGTTAGGAGGAAACATAT

Downstream 100 bases:

>100_bases
GAAAATGAACTATCTTCAAGTTGCAGGTTTTTTAGATAATTCACTAGCAAATGGTAAAGGCTTAAGATCAGTATTATTTT
TATCAGGCTGTAATCATAAA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 704; Mature: 704

Protein sequence:

>704_residues
MLYVVKRDGRRASFNSIKIANAIKRASEEIGFELKESEFMNLTQNVIKVLEKSVKDEITVEEIQNLVERTLMENNYKNIG
RAYANYRQERTRIREIKSDLMKAIEKIGIETDRDNANVGNNFSSKLLRIASESNKWHNLFNMPKHLAKAHENGDIYYHDL
DSYNLTVNCLHIPTKEILSKGFNTGYGFIRPPKRIESACELSCILLQSTQNDMFGGQSHPDFDNDMGYFVESTRKEIKEG
LREIGLEEQKIEEICERRLRKSISQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPMSEDAALVCELFLIEYEKGLGKGEQ
PIFPNIIFRVKDGVNKKPSDPYYNLFKLACRVASKRMNPTFMNIDADFNLEYYNKGYLPATMGCRTRVQSNINGEPDVKG
RGNIAPTTINLPRLGIISKGDINKFFELLDNRLDMVKEALLHRYEILKRLRIKDLPFVAGQNLMKGSENLQPEDSIEPIL
RQGTWGIGFIGLAETLKALIGKHHGESEKARELGLKIIKHIREFTDKITEETKLNWSCYATPAEGLSGKFIVQDKKIFGE
IKGVTDKEYYTNSFHIPVGYQISIKAKIDIEAPYHSICNGGHISYIELDDYPTDDIIMDIIDYAYSQTNINYLGINFHIK
YCKNCGTYIDNHESSCFQCGSKNIQGVSRVTGYLSLDERFGVGKAGERKDRLSHTNGKAFYEMR

Sequences:

>Translated_704_residues
MLYVVKRDGRRASFNSIKIANAIKRASEEIGFELKESEFMNLTQNVIKVLEKSVKDEITVEEIQNLVERTLMENNYKNIG
RAYANYRQERTRIREIKSDLMKAIEKIGIETDRDNANVGNNFSSKLLRIASESNKWHNLFNMPKHLAKAHENGDIYYHDL
DSYNLTVNCLHIPTKEILSKGFNTGYGFIRPPKRIESACELSCILLQSTQNDMFGGQSHPDFDNDMGYFVESTRKEIKEG
LREIGLEEQKIEEICERRLRKSISQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPMSEDAALVCELFLIEYEKGLGKGEQ
PIFPNIIFRVKDGVNKKPSDPYYNLFKLACRVASKRMNPTFMNIDADFNLEYYNKGYLPATMGCRTRVQSNINGEPDVKG
RGNIAPTTINLPRLGIISKGDINKFFELLDNRLDMVKEALLHRYEILKRLRIKDLPFVAGQNLMKGSENLQPEDSIEPIL
RQGTWGIGFIGLAETLKALIGKHHGESEKARELGLKIIKHIREFTDKITEETKLNWSCYATPAEGLSGKFIVQDKKIFGE
IKGVTDKEYYTNSFHIPVGYQISIKAKIDIEAPYHSICNGGHISYIELDDYPTDDIIMDIIDYAYSQTNINYLGINFHIK
YCKNCGTYIDNHESSCFQCGSKNIQGVSRVTGYLSLDERFGVGKAGERKDRLSHTNGKAFYEMR
>Mature_704_residues
MLYVVKRDGRRASFNSIKIANAIKRASEEIGFELKESEFMNLTQNVIKVLEKSVKDEITVEEIQNLVERTLMENNYKNIG
RAYANYRQERTRIREIKSDLMKAIEKIGIETDRDNANVGNNFSSKLLRIASESNKWHNLFNMPKHLAKAHENGDIYYHDL
DSYNLTVNCLHIPTKEILSKGFNTGYGFIRPPKRIESACELSCILLQSTQNDMFGGQSHPDFDNDMGYFVESTRKEIKEG
LREIGLEEQKIEEICERRLRKSISQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPMSEDAALVCELFLIEYEKGLGKGEQ
PIFPNIIFRVKDGVNKKPSDPYYNLFKLACRVASKRMNPTFMNIDADFNLEYYNKGYLPATMGCRTRVQSNINGEPDVKG
RGNIAPTTINLPRLGIISKGDINKFFELLDNRLDMVKEALLHRYEILKRLRIKDLPFVAGQNLMKGSENLQPEDSIEPIL
RQGTWGIGFIGLAETLKALIGKHHGESEKARELGLKIIKHIREFTDKITEETKLNWSCYATPAEGLSGKFIVQDKKIFGE
IKGVTDKEYYTNSFHIPVGYQISIKAKIDIEAPYHSICNGGHISYIELDDYPTDDIIMDIIDYAYSQTNINYLGINFHIK
YCKNCGTYIDNHESSCFQCGSKNIQGVSRVTGYLSLDERFGVGKAGERKDRLSHTNGKAFYEMR

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=718, Percent_Identity=32.8690807799443, Blast_Score=347, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 80306; Mature: 80306

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS51161 ATP_CONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYVVKRDGRRASFNSIKIANAIKRASEEIGFELKESEFMNLTQNVIKVLEKSVKDEITV
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHCCCCH
EEIQNLVERTLMENNYKNIGRAYANYRQERTRIREIKSDLMKAIEKIGIETDRDNANVGN
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
NFSSKLLRIASESNKWHNLFNMPKHLAKAHENGDIYYHDLDSYNLTVNCLHIPTKEILSK
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCHHHHHHC
GFNTGYGFIRPPKRIESACELSCILLQSTQNDMFGGQSHPDFDNDMGYFVESTRKEIKEG
CCCCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LREIGLEEQKIEEICERRLRKSISQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPMSEDA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCH
ALVCELFLIEYEKGLGKGEQPIFPNIIFRVKDGVNKKPSDPYYNLFKLACRVASKRMNPT
HHHHHHHHHHHHHCCCCCCCCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
FMNIDADFNLEYYNKGYLPATMGCRTRVQSNINGEPDVKGRGNIAPTTINLPRLGIISKG
EEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
DINKFFELLDNRLDMVKEALLHRYEILKRLRIKDLPFVAGQNLMKGSENLQPEDSIEPIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHCCCCCCCCCHHHHHHH
RQGTWGIGFIGLAETLKALIGKHHGESEKARELGLKIIKHIREFTDKITEETKLNWSCYA
HCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TPAEGLSGKFIVQDKKIFGEIKGVTDKEYYTNSFHIPVGYQISIKAKIDIEAPYHSICNG
CCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEEEEEECCCHHHHCCC
GHISYIELDDYPTDDIIMDIIDYAYSQTNINYLGINFHIKYCKNCGTYIDNHESSCFQCG
CCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHCCCCCCCCCCCHHHHCC
SKNIQGVSRVTGYLSLDERFGVGKAGERKDRLSHTNGKAFYEMR
CCCCCHHHHHHHHEEEHHHCCCCCCCCHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MLYVVKRDGRRASFNSIKIANAIKRASEEIGFELKESEFMNLTQNVIKVLEKSVKDEITV
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHCCCCH
EEIQNLVERTLMENNYKNIGRAYANYRQERTRIREIKSDLMKAIEKIGIETDRDNANVGN
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
NFSSKLLRIASESNKWHNLFNMPKHLAKAHENGDIYYHDLDSYNLTVNCLHIPTKEILSK
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCHHHHHHC
GFNTGYGFIRPPKRIESACELSCILLQSTQNDMFGGQSHPDFDNDMGYFVESTRKEIKEG
CCCCCCCCCCCHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LREIGLEEQKIEEICERRLRKSISQAMQGIVYNLNTMHSRAGSQVPFSSINIGIPMSEDA
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCH
ALVCELFLIEYEKGLGKGEQPIFPNIIFRVKDGVNKKPSDPYYNLFKLACRVASKRMNPT
HHHHHHHHHHHHHCCCCCCCCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
FMNIDADFNLEYYNKGYLPATMGCRTRVQSNINGEPDVKGRGNIAPTTINLPRLGIISKG
EEEECCCCCEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
DINKFFELLDNRLDMVKEALLHRYEILKRLRIKDLPFVAGQNLMKGSENLQPEDSIEPIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHCCCCCCCCCHHHHHHH
RQGTWGIGFIGLAETLKALIGKHHGESEKARELGLKIIKHIREFTDKITEETKLNWSCYA
HCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TPAEGLSGKFIVQDKKIFGEIKGVTDKEYYTNSFHIPVGYQISIKAKIDIEAPYHSICNG
CCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEEEEEECCCHHHHCCC
GHISYIELDDYPTDDIIMDIIDYAYSQTNINYLGINFHIKYCKNCGTYIDNHESSCFQCG
CCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHCCCCCCCCCCCHHHHCC
SKNIQGVSRVTGYLSLDERFGVGKAGERKDRLSHTNGKAFYEMR
CCCCCHHHHHHHHEEEHHHCCCCCCCCHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]