| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28198854
Identifier: 28198854
GI number: 28198854
Start: 1158242
End: 1159147
Strand: Reverse
Name: 28198854
Synonym: PD0955
Alternate gene names: NA
Gene position: 1159147-1158242 (Counterclockwise)
Preceding gene: 28198855
Following gene: 28198853
Centisome position: 46.0
GC content: 45.47
Gene sequence:
>906_bases ATGAGTCAGTTTCAGAAAAATCCGTTTTATTTTGGTAATACAGTTGTTTTTACCTTGCTTGTGTTGTTGTCCCTGGGAGT CCAAGCAACGCCAAGGGATGAGGTAATAGTGAAATCAATTTCTAAAGAGGAGCAAAGTGCTGCTCTCAATTATTGGACGG ATGAGCGGATTGAACAAACATTGGCACAAAATAAAGCCTATGATTTCAAACCAGATCGGGTTGATCCCGCTGGAGGTACC GAGATGATGTCGACAGGGCGACTATTTTTTATTCGTAACGGTCGTAATTCGTTTTGTACTGCGAATGCTGTGGAATCGGC GACGAAAAGCGTTATTGCTACTGCTGCACACTGTGCAAAGGTGCCAGCTACTCAGGCAGGACGTGTTAAAATCGAACATT TGGTATTTTTAGCCCACTATCGTAAAGGGGAGTGGGCTGGACGTTTTCCTATACGTAATGTCTTTACGGTGGTCGGTTGG GATGCACGTGAAGAAGATGGATTTGACTTTGCTTTTTTGAGTGCTGCATACGATAACTACGGAACTAAGGTCGGAAATCT CGTTATGGCATCACCAATTCGATTCTTCGCCCCACCATTGCTCGGTAACTTCTATATGTATGGTTATCCAGGTGCGATCC AAGGAGGCGAGTTTCCTTACAAATGCTCAACAGTACATCCCATTGAAAATCCAGTGCTCAGGCCAGGCCCGGAGTTGCGT ATTGGTAGCAACTGTAGAGATTTTTCTGGTGGGACTTCGGGGGGGCCTGTGATGCAGACATTACCAGACGGAACATATCA AACAGGAAATGTGAAATCCTACATATCAAGTTCTGGTTCGGTTGCATTTACTTATTGGGAGACTGCTGCTCATGGTGCTT GGGATCGGGCCCAACACGACGAATAG
Upstream 100 bases:
>100_bases TCGTAATTCGAAACAAAAAAGTCCTATTTCAATGATGAGAATAATACCTTGGCTATCGATTTATCGGCTTCTGTTATTTC TATTGATCTCTGGAGGGTTT
Downstream 100 bases:
>100_bases TTTTGTAGGATATACCACCAGCGGCAAGTACGTTTTGACTGTCTTTTCCCTCATATTCCCTCATATCTTTAGTAATCATG TCGGAACGTGCTTGCTTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: V8-Like Glu-Specific Endopeptidase
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MSQFQKNPFYFGNTVVFTLLVLLSLGVQATPRDEVIVKSISKEEQSAALNYWTDERIEQTLAQNKAYDFKPDRVDPAGGT EMMSTGRLFFIRNGRNSFCTANAVESATKSVIATAAHCAKVPATQAGRVKIEHLVFLAHYRKGEWAGRFPIRNVFTVVGW DAREEDGFDFAFLSAAYDNYGTKVGNLVMASPIRFFAPPLLGNFYMYGYPGAIQGGEFPYKCSTVHPIENPVLRPGPELR IGSNCRDFSGGTSGGPVMQTLPDGTYQTGNVKSYISSSGSVAFTYWETAAHGAWDRAQHDE
Sequences:
>Translated_301_residues MSQFQKNPFYFGNTVVFTLLVLLSLGVQATPRDEVIVKSISKEEQSAALNYWTDERIEQTLAQNKAYDFKPDRVDPAGGT EMMSTGRLFFIRNGRNSFCTANAVESATKSVIATAAHCAKVPATQAGRVKIEHLVFLAHYRKGEWAGRFPIRNVFTVVGW DAREEDGFDFAFLSAAYDNYGTKVGNLVMASPIRFFAPPLLGNFYMYGYPGAIQGGEFPYKCSTVHPIENPVLRPGPELR IGSNCRDFSGGTSGGPVMQTLPDGTYQTGNVKSYISSSGSVAFTYWETAAHGAWDRAQHDE >Mature_300_residues SQFQKNPFYFGNTVVFTLLVLLSLGVQATPRDEVIVKSISKEEQSAALNYWTDERIEQTLAQNKAYDFKPDRVDPAGGTE MMSTGRLFFIRNGRNSFCTANAVESATKSVIATAAHCAKVPATQAGRVKIEHLVFLAHYRKGEWAGRFPIRNVFTVVGWD AREEDGFDFAFLSAAYDNYGTKVGNLVMASPIRFFAPPLLGNFYMYGYPGAIQGGEFPYKCSTVHPIENPVLRPGPELRI GSNCRDFSGGTSGGPVMQTLPDGTYQTGNVKSYISSSGSVAFTYWETAAHGAWDRAQHDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33179; Mature: 33047
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQFQKNPFYFGNTVVFTLLVLLSLGVQATPRDEVIVKSISKEEQSAALNYWTDERIEQT CCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH LAQNKAYDFKPDRVDPAGGTEMMSTGRLFFIRNGRNSFCTANAVESATKSVIATAAHCAK HHHCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHH VPATQAGRVKIEHLVFLAHYRKGEWAGRFPIRNVFTVVGWDAREEDGFDFAFLSAAYDNY CCCCCCCCEEHHHEEEEEHHCCCCCCCCCCHHHEEEEECCCCCCCCCCCEEEHHHHHHHC GTKVGNLVMASPIRFFAPPLLGNFYMYGYPGAIQGGEFPYKCSTVHPIENPVLRPGPELR CCHHCCEEEECCHHHHCCHHHCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEE IGSNCRDFSGGTSGGPVMQTLPDGTYQTGNVKSYISSSGSVAFTYWETAAHGAWDRAQHD ECCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCEEEEEECCHHCCCCCCCCCC E C >Mature Secondary Structure SQFQKNPFYFGNTVVFTLLVLLSLGVQATPRDEVIVKSISKEEQSAALNYWTDERIEQT CCCCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH LAQNKAYDFKPDRVDPAGGTEMMSTGRLFFIRNGRNSFCTANAVESATKSVIATAAHCAK HHHCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHH VPATQAGRVKIEHLVFLAHYRKGEWAGRFPIRNVFTVVGWDAREEDGFDFAFLSAAYDNY CCCCCCCCEEHHHEEEEEHHCCCCCCCCCCHHHEEEEECCCCCCCCCCCEEEHHHHHHHC GTKVGNLVMASPIRFFAPPLLGNFYMYGYPGAIQGGEFPYKCSTVHPIENPVLRPGPELR CCHHCCEEEECCHHHHCCHHHCCEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEE IGSNCRDFSGGTSGGPVMQTLPDGTYQTGNVKSYISSSGSVAFTYWETAAHGAWDRAQHD ECCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCEEEEEECCHHCCCCCCCCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA