| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is tetV [C]
Identifier: 28198207
GI number: 28198207
Start: 362646
End: 363902
Strand: Reverse
Name: tetV [C]
Synonym: PD0285
Alternate gene names: 28198207
Gene position: 363902-362646 (Counterclockwise)
Preceding gene: 28198208
Following gene: 28198205
Centisome position: 14.44
GC content: 56.01
Gene sequence:
>1257_bases ATGAGCACATCCCCTTCCTCCAACGCAACGCTGCGCACGCTGCTATGCCGTCCTGGTTTCACGGCGGTGCTGGCCTATCG CATCGCTGCAACGCTGTCTCACCAAATCGTGTCCGTGACGATCGGCTGGCATATTTACGAGATCACGCGTAACCCACTTT TACTCGGTCTGGTCGCTCTGGCTGAGATTCTTCCGTTTTTCTGCATCGCTCCATTCGCTGGTTATTTGGTCGACCATCTA CCACGGCGTCGGCTGGGAATGTTCGCAAGTCTCGGCTTGGCAATGACTCCAACAATTTTACTGATAGCCGCATTCAACAC GGCACCAGTAACGGCACCAGTACAGACTACTTGGCCAATCTACGTTGCGGCCAGTTTGAGTGGCATGGTGCGTTCTTTCA TCGTCCCGGTGTACAACGCGCTGTTTGCACGTGTGCTGCCACGAGAAGACTATGCACGTGGTGCTGGACTTGGCACTGTA GCATTCCAGGCTAGTTTGGTGCTCAGTCCCATGCTGGGAGGCATCTTGATCGCTTTGGGCGGCAAAGAACTAGCTTATGC TGCCGGAGTGGTCGCAGCCATCATCGCGCTGCTTGCACTGGCATTGCTGCGGGTTGAAGAACCCGCAGTCGATAAACCAC GTGCCCCAGTATTGGGCAGCATCGCCGAGGGCGTGCGCTTTGTGTTCTCCAATCAGATCATGCTTGGTGCGATGGCACTG GACATGTTCTCCGTGCTGTTGGGGGGTGCCGTGTCGATGCTGCCGGCGTTCATCCAGGATATTTTTCACTATGGTCCGGA GGGTCTGGGCATTTTGCGTGGCACGCCGGCGCTGGGTTCAGTACTGGCGGGGCTATGGCTGGCAAGGTATCCGCTACAAC GTCACGCAGGACGCACCTTATTGCTGGCAGTCGCCGGATTCGGGATATGTACGATCGCGTTCGGTCTGTCCCAACACTTT TGGGTGTCAGCGGGGATACTTCTGGTTTATGGGGCATGCGACGGGATTTCTGTCGTCTCGCGCGCGTCAATCCTGCAATT GGTCACACCAGATGAGATGCGCGGTCGGGTCTCGTCAATCAATAGCATCTTCATTGGTTCGTCTAATGAGCTGGGCGCAT TCTATGACGGAGTCATGGCACGTTTTATCGGCCTGGTACACGCTGTGGTTCTGGGCGGCTTTATGACATTGGTTGTCGTT GGCATCACGGCACTGAAGGCACCGCGGTTACGCCGGTTGGATCTACGCGATCTGTAA
Upstream 100 bases:
>100_bases TCACCGATATCGGCCTCGCCAAACACCTGTCGCCAACACGTAATAATGGTTTGGCAGCAATGCTCGACTTGATTCGCAAT ACAGCGCAAGCACTTACCGC
Downstream 100 bases:
>100_bases CAAGCTAATGAGTGGCATGGTCGATGTTCTGCCCTTTTGTGCCAGCACTGATCGGGCAGTTGGTCGATATCCGGGGAGGC GGCAGAGTGGGCGGTGATGT
Product: drug:proton antiporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; DrugProton Antiporter; MFS Permease; Membrane Transporter; Facilitator Superfamily Transporter; Transporter Facilitator Family; Transmembrane Protein; Permease Of Facilitator Superfamily; MFS Family Transporter; Facilitator Superfamily Transporter Permease; Permease; Facilitator Superfamily; Macrolide-Efflux Protein; Integral Membrane Protein; Facilitator MFS1 Protein; Permease Protein; Permease Facilitator Superfamily; Integral Membrane Protein MFS Transporter; Enterobactin Exporter EntS; Siderophore Export Protein; Mfs Transporter; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Membrame Protein; Facilitator Superfamily Multidrug Efflux Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; DrugH+ Antiporter; Facilitator Family Transporter; Facilitator Superfamily Multidrug Resistance Protein; Drug Resistance Efflux Protein; Drug Proton Antiporter; Facilitator Superfamily Transporter Transporter; Permeases Of Facilitator Superfamily; Permeases Of Facilitator Superfamily Protein
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MSTSPSSNATLRTLLCRPGFTAVLAYRIAATLSHQIVSVTIGWHIYEITRNPLLLGLVALAEILPFFCIAPFAGYLVDHL PRRRLGMFASLGLAMTPTILLIAAFNTAPVTAPVQTTWPIYVAASLSGMVRSFIVPVYNALFARVLPREDYARGAGLGTV AFQASLVLSPMLGGILIALGGKELAYAAGVVAAIIALLALALLRVEEPAVDKPRAPVLGSIAEGVRFVFSNQIMLGAMAL DMFSVLLGGAVSMLPAFIQDIFHYGPEGLGILRGTPALGSVLAGLWLARYPLQRHAGRTLLLAVAGFGICTIAFGLSQHF WVSAGILLVYGACDGISVVSRASILQLVTPDEMRGRVSSINSIFIGSSNELGAFYDGVMARFIGLVHAVVLGGFMTLVVV GITALKAPRLRRLDLRDL
Sequences:
>Translated_418_residues MSTSPSSNATLRTLLCRPGFTAVLAYRIAATLSHQIVSVTIGWHIYEITRNPLLLGLVALAEILPFFCIAPFAGYLVDHL PRRRLGMFASLGLAMTPTILLIAAFNTAPVTAPVQTTWPIYVAASLSGMVRSFIVPVYNALFARVLPREDYARGAGLGTV AFQASLVLSPMLGGILIALGGKELAYAAGVVAAIIALLALALLRVEEPAVDKPRAPVLGSIAEGVRFVFSNQIMLGAMAL DMFSVLLGGAVSMLPAFIQDIFHYGPEGLGILRGTPALGSVLAGLWLARYPLQRHAGRTLLLAVAGFGICTIAFGLSQHF WVSAGILLVYGACDGISVVSRASILQLVTPDEMRGRVSSINSIFIGSSNELGAFYDGVMARFIGLVHAVVLGGFMTLVVV GITALKAPRLRRLDLRDL >Mature_417_residues STSPSSNATLRTLLCRPGFTAVLAYRIAATLSHQIVSVTIGWHIYEITRNPLLLGLVALAEILPFFCIAPFAGYLVDHLP RRRLGMFASLGLAMTPTILLIAAFNTAPVTAPVQTTWPIYVAASLSGMVRSFIVPVYNALFARVLPREDYARGAGLGTVA FQASLVLSPMLGGILIALGGKELAYAAGVVAAIIALLALALLRVEEPAVDKPRAPVLGSIAEGVRFVFSNQIMLGAMALD MFSVLLGGAVSMLPAFIQDIFHYGPEGLGILRGTPALGSVLAGLWLARYPLQRHAGRTLLLAVAGFGICTIAFGLSQHFW VSAGILLVYGACDGISVVSRASILQLVTPDEMRGRVSSINSIFIGSSNELGAFYDGVMARFIGLVHAVVLGGFMTLVVVG ITALKAPRLRRLDLRDL
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44285; Mature: 44154
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSPSSNATLRTLLCRPGFTAVLAYRIAATLSHQIVSVTIGWHIYEITRNPLLLGLVAL CCCCCCCCCHHHHEEECCCHHHHHHHHHHHHHHHHHEEEEECEEEEEECCCHHHHHHHHH AEILPFFCIAPFAGYLVDHLPRRRLGMFASLGLAMTPTILLIAAFNTAPVTAPVQTTWPI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHEEEECCCCCCCCCCCCCCHH YVAASLSGMVRSFIVPVYNALFARVLPREDYARGAGLGTVAFQASLVLSPMLGGILIALG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEC GKELAYAAGVVAAIIALLALALLRVEEPAVDKPRAPVLGSIAEGVRFVFSNQIMLGAMAL CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHH DMFSVLLGGAVSMLPAFIQDIFHYGPEGLGILRGTPALGSVLAGLWLARYPLQRHAGRTL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHCCCEE LLAVAGFGICTIAFGLSQHFWVSAGILLVYGACDGISVVSRASILQLVTPDEMRGRVSSI EHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHEECCCHHHHHHHHHC NSIFIGSSNELGAFYDGVMARFIGLVHAVVLGGFMTLVVVGITALKAPRLRRLDLRDL CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure STSPSSNATLRTLLCRPGFTAVLAYRIAATLSHQIVSVTIGWHIYEITRNPLLLGLVAL CCCCCCCCHHHHEEECCCHHHHHHHHHHHHHHHHHEEEEECEEEEEECCCHHHHHHHHH AEILPFFCIAPFAGYLVDHLPRRRLGMFASLGLAMTPTILLIAAFNTAPVTAPVQTTWPI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHEEEECCCCCCCCCCCCCCHH YVAASLSGMVRSFIVPVYNALFARVLPREDYARGAGLGTVAFQASLVLSPMLGGILIALG HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEC GKELAYAAGVVAAIIALLALALLRVEEPAVDKPRAPVLGSIAEGVRFVFSNQIMLGAMAL CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHH DMFSVLLGGAVSMLPAFIQDIFHYGPEGLGILRGTPALGSVLAGLWLARYPLQRHAGRTL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHCCCEE LLAVAGFGICTIAFGLSQHFWVSAGILLVYGACDGISVVSRASILQLVTPDEMRGRVSSI EHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHEECCCHHHHHHHHHC NSIFIGSSNELGAFYDGVMARFIGLVHAVVLGGFMTLVVVGITALKAPRLRRLDLRDL CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA