Click here to switch to the map view.

The map label for this gene is ygiQ [C]

Identifier: 27365539

GI number: 27365539

Start: 2217979

End: 2220285

Strand: Reverse

Name: ygiQ [C]

Synonym: VV1_2212

Alternate gene names: 27365539

Gene position: 2220285-2217979 (Counterclockwise)

Preceding gene: 27365544

Following gene: 326423968

Centisome position: 67.65

GC content: 51.97

Gene sequence:

>2307_bases
ATGCACAGCGACATTACCCCTATCCATACCCACAAAAAATATTGGGCCGAATGTTTTGGCACCGCCCCTTTTCTGCCAAC
CAGCAGAAAAGAGATGGACGCATTGGGTTGGGATAGCTGTGACATTGTCCTAGTCACTGGCGATGCTTATGTCGACCATC
CGAGTTTTGGTATGGCGATCATCGGTCGCTTACTGGAAGCACAAGGCTTTCGCGTGGGCATCATTGCTCAACCACAGTGG
CAAGACAAAACCGACTTCATGTCGCTTGGTAAACCAAATCTGTTTTTTGGTGTCACCTCAGGCAATATGGACTCGATGAT
CAACCGCTACACTTCAGATCGCAAATTACGTCACGATGACGCCTACACGCCAAATAATGAAGGTGGCAAGCGCCCAGATC
GCGCCACTCTTGTTTACTCGCAGCGTTGTCGTGAAGCCTATAAAGACGTGCCTATCGTTTTAGGCGGCATTGAAGCAAGC
CTACGCCGTGTTGCTCACTACGATTACTGGTCCGACAAAGTGCGTCGCTCTGTTTTGCTTGATGCCAAAGCGGACATTTT
GTTGTTTGGCAACGCAGAACGTGCACTGGTGGAAGTGGCGCATCGTTTGGCTGAGGGCGAAGAGATCGCTCAAATGACCA
ACATTCGTGGCACCGCGGTTAACCTTGCGGCAGAGCCAGAAGGCTACACCATCATCGATTCCTCGCGCATCGAGAAGCCA
CGTAAAGAAGCCTTTATTCCGCCAAATCCATACGAAGTGGAAACGCAGTGTGAAACCAAATCGGAAGAGCCCAAAGCGCA
GCCGATTACTATTCGTCCTTCGCGTCACGACGCCGCGACCACTGCGGTGCGTTTGCCAAGTTTCGAGAAGCTGCAAAACG
ACCGCATTCTTTATGCGCACGCCAGCCGTATTCTCCACTTGGAAACCAACCCTTATTCTGGCCGCGCACTGATCCAGCGT
CACGGTAACCGCGAGCTGTGGGTAAACCAAGCGCCGATCCCACTGACCACAGAAGAGATGGATTATGTGTTCGGTTTGCC
ATATGCGCGAGTTCCGCATCCTAAATATGGTAAAGCGAAGATTCCTGCCTATGACATGATCAAAACCTCCGTCAACATCA
TGCGTGGCTGTTTTGGTGGCTGTTCATTCTGCTCAATCACCGAGCACGAAGGACGCATCATTCAAAACCGCTCACAAGAG
TCGATTTTGACCGAGCTGGAAGAGATCCGCGATAAAGTACCCGGCTTTACGGGCACCATTTCTGACTTAGGCGGGCCAAC
AGCCAATATGTATCGCCTTGGTTGTAGCGATCCAAAAGCCGAAGCCAACTGTCGTCGCCCTTCGTGTGTCTTCCCGGGTA
TCTGTAATAAGCTCAATACCGATCATAAACACACCATCGACCTTTACCGCGCAGCGCGTCAGGTTAAAGGGGTGAAGAAA
GTGATGATCGCCTCGGGCGTTCGTTATGATCTCGCGATTGAATCTCCTGAATACGTGAAAGAGCTGGTTACGCACCACGT
TGGTGGTTATTTGAAGATTGCCCCTGAGCACACCGAAAAGGGCCCTCTCGACCTGATGATGAAGCCGGGTATGGGTACTT
ACGATCGCTTCAAAGAGATGTTCGATAAGTACAGCCAAGAAGCGGGCAAGAAGCAGTATCTGATCCCGTACTTCATCTCT
GCGCACCCGGGCACGACCGATGAAGACATGCTGAACTTGGCATTGTGGCTGAAGAAGAACAATTACGAGTGCGATCAGGT
ACAGAACTTCTACCCATCGCCAATGTGTAATGCCACCTCGATGTACTACTCTGAGACTAACCCACTTAAACGCGTGAAGT
ACAAACAGCGTGAAGATGTGCCGGTAGCCAAAGGGGATCGCCAGCGTCGACTGCACAAAGCGCTGTTGCGTTACCACGAT
CCAGCCAACTGGCCGTTGATCCGTGAAGCACTGATCACTATGGGTAAGAAGTATTTGATCGGCGATAAACCGGGCTGTTT
GGTGCCAGCGGAAGATATGGATGCTCGCACGCCAGCGCAGCGTCGTAAATCAGGCCGCCATGGTGCCAACCGTTTTGCTA
CCAAACACACCAGCACCCAACCGGGTTTCCCGGGTGATAAAGCTAACGCTGGTTCAGGCAAAAAACCAACACGTGGCGGC
CAGTCAAACTCGGCTCCATCACGTTCAGGCTCAGCAACTGGTGGCAAACATCCACAACGCTCTGGTGCAAACACCGGTGG
GAAAAGCTCGGGTGGGAAAAACTCACCACGTGCAGGTGGCAGAAACCAACCGTCACGAGCTCGCTAA

Upstream 100 bases:

>100_bases
TTGGTTAGCGAAAATACGTGATAAAACTAGGGTTATGTAGTGGTGGATAGTGGTCTCACAAGCCGCTATAATTCGCGCTC
GCAAAATCTGAGGTTATTTT

Downstream 100 bases:

>100_bases
CAGCAATAAAAAGAGACGTCTCTGATCATCACAAAGCGCCTCTAAGTTGTTCAAAAGCCAAGGTCTCGACCTTGGCTTTT
TTATGTGGATGTCACGCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MHSDITPIHTHKKYWAECFGTAPFLPTSRKEMDALGWDSCDIVLVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQPQW
QDKTDFMSLGKPNLFFGVTSGNMDSMINRYTSDRKLRHDDAYTPNNEGGKRPDRATLVYSQRCREAYKDVPIVLGGIEAS
LRRVAHYDYWSDKVRRSVLLDAKADILLFGNAERALVEVAHRLAEGEEIAQMTNIRGTAVNLAAEPEGYTIIDSSRIEKP
RKEAFIPPNPYEVETQCETKSEEPKAQPITIRPSRHDAATTAVRLPSFEKLQNDRILYAHASRILHLETNPYSGRALIQR
HGNRELWVNQAPIPLTTEEMDYVFGLPYARVPHPKYGKAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQE
SILTELEEIRDKVPGFTGTISDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICNKLNTDHKHTIDLYRAARQVKGVKK
VMIASGVRYDLAIESPEYVKELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFKEMFDKYSQEAGKKQYLIPYFIS
AHPGTTDEDMLNLALWLKKNNYECDQVQNFYPSPMCNATSMYYSETNPLKRVKYKQREDVPVAKGDRQRRLHKALLRYHD
PANWPLIREALITMGKKYLIGDKPGCLVPAEDMDARTPAQRRKSGRHGANRFATKHTSTQPGFPGDKANAGSGKKPTRGG
QSNSAPSRSGSATGGKHPQRSGANTGGKSSGGKNSPRAGGRNQPSRAR

Sequences:

>Translated_768_residues
MHSDITPIHTHKKYWAECFGTAPFLPTSRKEMDALGWDSCDIVLVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQPQW
QDKTDFMSLGKPNLFFGVTSGNMDSMINRYTSDRKLRHDDAYTPNNEGGKRPDRATLVYSQRCREAYKDVPIVLGGIEAS
LRRVAHYDYWSDKVRRSVLLDAKADILLFGNAERALVEVAHRLAEGEEIAQMTNIRGTAVNLAAEPEGYTIIDSSRIEKP
RKEAFIPPNPYEVETQCETKSEEPKAQPITIRPSRHDAATTAVRLPSFEKLQNDRILYAHASRILHLETNPYSGRALIQR
HGNRELWVNQAPIPLTTEEMDYVFGLPYARVPHPKYGKAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQE
SILTELEEIRDKVPGFTGTISDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICNKLNTDHKHTIDLYRAARQVKGVKK
VMIASGVRYDLAIESPEYVKELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFKEMFDKYSQEAGKKQYLIPYFIS
AHPGTTDEDMLNLALWLKKNNYECDQVQNFYPSPMCNATSMYYSETNPLKRVKYKQREDVPVAKGDRQRRLHKALLRYHD
PANWPLIREALITMGKKYLIGDKPGCLVPAEDMDARTPAQRRKSGRHGANRFATKHTSTQPGFPGDKANAGSGKKPTRGG
QSNSAPSRSGSATGGKHPQRSGANTGGKSSGGKNSPRAGGRNQPSRAR
>Mature_768_residues
MHSDITPIHTHKKYWAECFGTAPFLPTSRKEMDALGWDSCDIVLVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQPQW
QDKTDFMSLGKPNLFFGVTSGNMDSMINRYTSDRKLRHDDAYTPNNEGGKRPDRATLVYSQRCREAYKDVPIVLGGIEAS
LRRVAHYDYWSDKVRRSVLLDAKADILLFGNAERALVEVAHRLAEGEEIAQMTNIRGTAVNLAAEPEGYTIIDSSRIEKP
RKEAFIPPNPYEVETQCETKSEEPKAQPITIRPSRHDAATTAVRLPSFEKLQNDRILYAHASRILHLETNPYSGRALIQR
HGNRELWVNQAPIPLTTEEMDYVFGLPYARVPHPKYGKAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQE
SILTELEEIRDKVPGFTGTISDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICNKLNTDHKHTIDLYRAARQVKGVKK
VMIASGVRYDLAIESPEYVKELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFKEMFDKYSQEAGKKQYLIPYFIS
AHPGTTDEDMLNLALWLKKNNYECDQVQNFYPSPMCNATSMYYSETNPLKRVKYKQREDVPVAKGDRQRRLHKALLRYHD
PANWPLIREALITMGKKYLIGDKPGCLVPAEDMDARTPAQRRKSGRHGANRFATKHTSTQPGFPGDKANAGSGKKPTRGG
QSNSAPSRSGSATGGKHPQRSGANTGGKSSGGKNSPRAGGRNQPSRAR

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=730, Percent_Identity=66.027397260274, Blast_Score=996, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 85834; Mature: 85834

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSDITPIHTHKKYWAECFGTAPFLPTSRKEMDALGWDSCDIVLVTGDAYVDHPSFGMAI
CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEECCCEECCCCHHHHH
IGRLLEAQGFRVGIIAQPQWQDKTDFMSLGKPNLFFGVTSGNMDSMINRYTSDRKLRHDD
HHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCC
AYTPNNEGGKRPDRATLVYSQRCREAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSVLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHC
DAKADILLFGNAERALVEVAHRLAEGEEIAQMTNIRGTAVNLAAEPEGYTIIDSSRIEKP
CCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCCCEEEEHHHCCCC
RKEAFIPPNPYEVETQCETKSEEPKAQPITIRPSRHDAATTAVRLPSFEKLQNDRILYAH
HHHCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCHHHHEEECCCHHHHCCCCEEEEE
ASRILHLETNPYSGRALIQRHGNRELWVNQAPIPLTTEEMDYVFGLPYARVPHPKYGKAK
CCEEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCHHCCHHHHCCCCCCCCCCCCCCCC
IPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQESILTELEEIRDKVPGFTGTI
CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEH
SDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICNKLNTDHKHTIDLYRAARQVKGVKK
HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VMIASGVRYDLAIESPEYVKELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFKEM
HHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHH
FDKYSQEAGKKQYLIPYFISAHPGTTDEDMLNLALWLKKNNYECDQVQNFYPSPMCNATS
HHHHHHHCCCCEEEEEEEEECCCCCCHHHHHEEEEEEECCCCCHHHHHCCCCCCCCCCHH
MYYSETNPLKRVKYKQREDVPVAKGDRQRRLHKALLRYHDPANWPLIREALITMGKKYLI
EEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEE
GDKPGCLVPAEDMDARTPAQRRKSGRHGANRFATKHTSTQPGFPGDKANAGSGKKPTRGG
CCCCCCEECCCCCCCCCCHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
QSNSAPSRSGSATGGKHPQRSGANTGGKSSGGKNSPRAGGRNQPSRAR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHSDITPIHTHKKYWAECFGTAPFLPTSRKEMDALGWDSCDIVLVTGDAYVDHPSFGMAI
CCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCEEEEECCCEECCCCHHHHH
IGRLLEAQGFRVGIIAQPQWQDKTDFMSLGKPNLFFGVTSGNMDSMINRYTSDRKLRHDD
HHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCC
AYTPNNEGGKRPDRATLVYSQRCREAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSVLL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHHC
DAKADILLFGNAERALVEVAHRLAEGEEIAQMTNIRGTAVNLAAEPEGYTIIDSSRIEKP
CCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECCCCCEEEEHHHCCCC
RKEAFIPPNPYEVETQCETKSEEPKAQPITIRPSRHDAATTAVRLPSFEKLQNDRILYAH
HHHCCCCCCCCEEECCCCCCCCCCCCCCEEECCCCCCHHHHEEECCCHHHHCCCCEEEEE
ASRILHLETNPYSGRALIQRHGNRELWVNQAPIPLTTEEMDYVFGLPYARVPHPKYGKAK
CCEEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCHHCCHHHHCCCCCCCCCCCCCCCC
IPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQESILTELEEIRDKVPGFTGTI
CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEH
SDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICNKLNTDHKHTIDLYRAARQVKGVKK
HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VMIASGVRYDLAIESPEYVKELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFKEM
HHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCHHHHHHHH
FDKYSQEAGKKQYLIPYFISAHPGTTDEDMLNLALWLKKNNYECDQVQNFYPSPMCNATS
HHHHHHHCCCCEEEEEEEEECCCCCCHHHHHEEEEEEECCCCCHHHHHCCCCCCCCCCHH
MYYSETNPLKRVKYKQREDVPVAKGDRQRRLHKALLRYHDPANWPLIREALITMGKKYLI
EEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEE
GDKPGCLVPAEDMDARTPAQRRKSGRHGANRFATKHTSTQPGFPGDKANAGSGKKPTRGG
CCCCCCEECCCCCCCCCCHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
QSNSAPSRSGSATGGKHPQRSGANTGGKSSGGKNSPRAGGRNQPSRAR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA