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The map label for this gene is sgrR [H]

Identifier: 27365533

GI number: 27365533

Start: 2208632

End: 2210422

Strand: Reverse

Name: sgrR [H]

Synonym: VV1_2205

Alternate gene names: 27365533

Gene position: 2210422-2208632 (Counterclockwise)

Preceding gene: 27365534

Following gene: 27365528

Centisome position: 67.35

GC content: 49.8

Gene sequence:

>1791_bases
ATGATGCTCACCGAGGTATGTGTGTCCGATCTGAACTTACTGCGCTATTACGCGCGACTGACCCCATTAGGTGTGGGAGA
TGAAATAAAAACCACCCTATCTGAGCTGGCTGATCGTCTTTTTACCAGCACTCGTCATGCGCGTAATCTTTTGGTGAAGC
TGCATCAAGTGGGCTGGCTGAGCTGGACGCCCAAGCCAGGACGCCATCATCGTTCATCACTGGTATTGAATTTTGAGCTC
ATTGCGTTGAAAGAAGAGCTGGCGGCCAAACGGGTTCGCATCGGCAAATACGAAAAAGCCCTCGCTATTCTTGATAACGA
TGACATTGCCTTCGCCAAGTTATTGAAACGTACATCGGGCGCGACACTGCAAGAAGGCCGGCTGCATATTCAGCTGACTT
ACAAGCGCATGTTTGAGCCATTATTGCCCCATCTTCCACAACGCAGTAGCGAACGTTTCTTAATTCGCCAGATCTATTGT
TGTTTGGTGTCCGTTGATACCCATGGCCAGATTCAACCAGAGCTGGCACACCATTGGCACTATGATACTCAGTTGTTGCA
ATGGACTTTCCATCTGCGGCCGGGGTTGACGTTTCACAACGGCGCCGCCATTGATGCAGCGAGCATTGTGAGTCTATTTG
CCAAACTGTCCCGCTTGCCAAGTCATCAACAAGAGCTGGCTCACGTTGTCGACATCAAAGCGCCAACGCCTTTTAAGGTG
GTGTTCTCCCTCGATCGACCCGATCTTGGTTTTGCAGGGCTGATTACAGGCGTGAAATACGCGATACAGCCAGTTAGCCA
GCTCAACAACGTTGCTGGCCTTCGCGAGCGTCGCATACCCGTTGTGGGCAGTGGCGCCTTTGAAGTGACGGAACACAATG
AGAATAAGCTCTGCTTAAAAGCGTTTAATCAGTTTTATGCGTGCCGAGCATTGACAGAAAAAGTAACCATCTGGCGGGTA
GATGAAGAGCGCTTAAGCGCGACGTTGATTGAAACCAACCATCCAGAATCGCCACCAACGCCTTGCAGTTTCAACGTCAC
AAAGAATGCCAAACAACGACAACCTAATGATTCCGAGCAACAACATAGCCGAGTAGAAGATGGATGTTTGATGCTGCTTT
TTAATCAGCGCGCTCCCCTGCCTCTTGATTATGCTCAGCGCCACTACTTGATGCAGATGCTCAGCCCATCCGCCATTGAG
GAGGAGATCCGTCGTCACGGCAATATGTTTGGCGTTGTCCACGCCGCCAATTTGCTGCCACATTGGCGTGCTGTACTCAA
AACGCCAGCGAACGTCGTTTCGCTGCCTCGACGAATCACCCTCGCGGTTTACAATTACACTGCGTTGAATATTTGTGCGA
ATGCCATTGCTAGGCTGCTAGCCAAGATTGGCATTGAAGTGGTGATTCGTTGCTATACCTATCAAGAATTACATCAGCGC
AGTTTAGATCAGCAATGGGATGAAGATTTAGTGCTCACCAGCCTTAATCTGGATGACAATCGACATCCCTCGGCCTTTGC
CATGCTGTTTAGTAATCCGATTCTTCATGCTTGCATGACTGAAAGCGACAAAGCTTGGTTGCTCAATCAGTTAACTCTGC
TGAGAGAGCAGGTACCCCTGCACGAGTATCTGCAACAGTTAGAGCCGATTGCATCACTGCTCATTAGTGAGTGTTGGCTT
ACTCCTCTGTTTCATCATCGTCAGACTTTGCGCTTTCACGGGGTGCTTCATGACGTTGCGCTCACCAACTGGGGCTGGCC
AGATATTCGTAATGTGTGGTCAGCGGATTAG

Upstream 100 bases:

>100_bases
CTACGCACTCAACTGTCTCAAAACCCGCAAAAGAGGAACAAACCAAGCGGAAGGTTTTCACCATTAGCCACACCAATTTT
CATTACAATGGTCACTCTCC

Downstream 100 bases:

>100_bases
AGATTTCCCGTGTTCTAAAGGCTTTTGTCTGCCTATCTCTTTCAGCTATTTCTTGTCATCCTCGCGCAGGCGGGGACCCA
TGCTAAAGCGTGCGCTGTAG

Product: putative transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 596; Mature: 596

Protein sequence:

>596_residues
MMLTEVCVSDLNLLRYYARLTPLGVGDEIKTTLSELADRLFTSTRHARNLLVKLHQVGWLSWTPKPGRHHRSSLVLNFEL
IALKEELAAKRVRIGKYEKALAILDNDDIAFAKLLKRTSGATLQEGRLHIQLTYKRMFEPLLPHLPQRSSERFLIRQIYC
CLVSVDTHGQIQPELAHHWHYDTQLLQWTFHLRPGLTFHNGAAIDAASIVSLFAKLSRLPSHQQELAHVVDIKAPTPFKV
VFSLDRPDLGFAGLITGVKYAIQPVSQLNNVAGLRERRIPVVGSGAFEVTEHNENKLCLKAFNQFYACRALTEKVTIWRV
DEERLSATLIETNHPESPPTPCSFNVTKNAKQRQPNDSEQQHSRVEDGCLMLLFNQRAPLPLDYAQRHYLMQMLSPSAIE
EEIRRHGNMFGVVHAANLLPHWRAVLKTPANVVSLPRRITLAVYNYTALNICANAIARLLAKIGIEVVIRCYTYQELHQR
SLDQQWDEDLVLTSLNLDDNRHPSAFAMLFSNPILHACMTESDKAWLLNQLTLLREQVPLHEYLQQLEPIASLLISECWL
TPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSAD

Sequences:

>Translated_596_residues
MMLTEVCVSDLNLLRYYARLTPLGVGDEIKTTLSELADRLFTSTRHARNLLVKLHQVGWLSWTPKPGRHHRSSLVLNFEL
IALKEELAAKRVRIGKYEKALAILDNDDIAFAKLLKRTSGATLQEGRLHIQLTYKRMFEPLLPHLPQRSSERFLIRQIYC
CLVSVDTHGQIQPELAHHWHYDTQLLQWTFHLRPGLTFHNGAAIDAASIVSLFAKLSRLPSHQQELAHVVDIKAPTPFKV
VFSLDRPDLGFAGLITGVKYAIQPVSQLNNVAGLRERRIPVVGSGAFEVTEHNENKLCLKAFNQFYACRALTEKVTIWRV
DEERLSATLIETNHPESPPTPCSFNVTKNAKQRQPNDSEQQHSRVEDGCLMLLFNQRAPLPLDYAQRHYLMQMLSPSAIE
EEIRRHGNMFGVVHAANLLPHWRAVLKTPANVVSLPRRITLAVYNYTALNICANAIARLLAKIGIEVVIRCYTYQELHQR
SLDQQWDEDLVLTSLNLDDNRHPSAFAMLFSNPILHACMTESDKAWLLNQLTLLREQVPLHEYLQQLEPIASLLISECWL
TPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSAD
>Mature_596_residues
MMLTEVCVSDLNLLRYYARLTPLGVGDEIKTTLSELADRLFTSTRHARNLLVKLHQVGWLSWTPKPGRHHRSSLVLNFEL
IALKEELAAKRVRIGKYEKALAILDNDDIAFAKLLKRTSGATLQEGRLHIQLTYKRMFEPLLPHLPQRSSERFLIRQIYC
CLVSVDTHGQIQPELAHHWHYDTQLLQWTFHLRPGLTFHNGAAIDAASIVSLFAKLSRLPSHQQELAHVVDIKAPTPFKV
VFSLDRPDLGFAGLITGVKYAIQPVSQLNNVAGLRERRIPVVGSGAFEVTEHNENKLCLKAFNQFYACRALTEKVTIWRV
DEERLSATLIETNHPESPPTPCSFNVTKNAKQRQPNDSEQQHSRVEDGCLMLLFNQRAPLPLDYAQRHYLMQMLSPSAIE
EEIRRHGNMFGVVHAANLLPHWRAVLKTPANVVSLPRRITLAVYNYTALNICANAIARLLAKIGIEVVIRCYTYQELHQR
SLDQQWDEDLVLTSLNLDDNRHPSAFAMLFSNPILHACMTESDKAWLLNQLTLLREQVPLHEYLQQLEPIASLLISECWL
TPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSAD

Specific function: Activates the small RNA gene sgrS under glucose- phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding

COG id: COG4533

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786256, Length=591, Percent_Identity=25.7191201353638, Blast_Score=185, Evalue=6e-48,
Organism=Escherichia coli, GI1786650, Length=585, Percent_Identity=24.7863247863248, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 68182; Mature: 68182

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLTEVCVSDLNLLRYYARLTPLGVGDEIKTTLSELADRLFTSTRHARNLLVKLHQVGWL
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
SWTPKPGRHHRSSLVLNFELIALKEELAAKRVRIGKYEKALAILDNDDIAFAKLLKRTSG
ECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHEEEEECCCCHHHHHHHHHCCC
ATLQEGRLHIQLTYKRMFEPLLPHLPQRSSERFLIRQIYCCLVSVDTHGQIQPELAHHWH
CCEECCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCHHHHHHCC
YDTQLLQWTFHLRPGLTFHNGAAIDAASIVSLFAKLSRLPSHQQELAHVVDIKAPTPFKV
CCCEEEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEE
VFSLDRPDLGFAGLITGVKYAIQPVSQLNNVAGLRERRIPVVGSGAFEVTEHNENKLCLK
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCHHHHH
AFNQFYACRALTEKVTIWRVDEERLSATLIETNHPESPPTPCSFNVTKNAKQRQPNDSEQ
HHHHHHHHHHHHHCEEEEEECHHHHHEEEEECCCCCCCCCCCEECCCCCHHHCCCCCHHH
QHSRVEDGCLMLLFNQRAPLPLDYAQRHYLMQMLSPSAIEEEIRRHGNMFGVVHAANLLP
HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEHHHHHHHH
HWRAVLKTPANVVSLPRRITLAVYNYTALNICANAIARLLAKIGIEVVIRCYTYQELHQR
HHHHHHHCCHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLDQQWDEDLVLTSLNLDDNRHPSAFAMLFSNPILHACMTESDKAWLLNQLTLLREQVPL
HHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCH
HEYLQQLEPIASLLISECWLTPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
>Mature Secondary Structure
MMLTEVCVSDLNLLRYYARLTPLGVGDEIKTTLSELADRLFTSTRHARNLLVKLHQVGWL
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
SWTPKPGRHHRSSLVLNFELIALKEELAAKRVRIGKYEKALAILDNDDIAFAKLLKRTSG
ECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHEEEEECCCCHHHHHHHHHCCC
ATLQEGRLHIQLTYKRMFEPLLPHLPQRSSERFLIRQIYCCLVSVDTHGQIQPELAHHWH
CCEECCCEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCHHHHHHCC
YDTQLLQWTFHLRPGLTFHNGAAIDAASIVSLFAKLSRLPSHQQELAHVVDIKAPTPFKV
CCCEEEEEEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEE
VFSLDRPDLGFAGLITGVKYAIQPVSQLNNVAGLRERRIPVVGSGAFEVTEHNENKLCLK
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCHHHHH
AFNQFYACRALTEKVTIWRVDEERLSATLIETNHPESPPTPCSFNVTKNAKQRQPNDSEQ
HHHHHHHHHHHHHCEEEEEECHHHHHEEEEECCCCCCCCCCCEECCCCCHHHCCCCCHHH
QHSRVEDGCLMLLFNQRAPLPLDYAQRHYLMQMLSPSAIEEEIRRHGNMFGVVHAANLLP
HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEHHHHHHHH
HWRAVLKTPANVVSLPRRITLAVYNYTALNICANAIARLLAKIGIEVVIRCYTYQELHQR
HHHHHHHCCHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLDQQWDEDLVLTSLNLDDNRHPSAFAMLFSNPILHACMTESDKAWLLNQLTLLREQVPL
HHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCH
HEYLQQLEPIASLLISECWLTPLFHHRQTLRFHGVLHDVALTNWGWPDIRNVWSAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA