Click here to switch to the map view.

The map label for this gene is ndvB [H]

Identifier: 27365027

GI number: 27365027

Start: 1637719

End: 1640124

Strand: Reverse

Name: ndvB [H]

Synonym: VV1_1665

Alternate gene names: 27365027

Gene position: 1640124-1637719 (Counterclockwise)

Preceding gene: 27365028

Following gene: 27365026

Centisome position: 49.98

GC content: 49.63

Gene sequence:

>2406_bases
ATGAAATACGGCTATTTCGATAATGACAATCGTGAATACGTCATCACTCGCCCGGATGTACCGGCACCATGGACCAACTA
CTTAGGTACCGAAAAATTCTGTACCGTTATTTCACACAACGCAGGGGGATACTCTTTCTATCACTCTCCTGAGTACAACC
GTGTGACCAAGTTCCGTCCAAACTTTACTCAAGATCGTCCGGGGCACTATGTCTACCTACGCGATGATGCAACGGGTGAT
TACTGGTCAATTTCATGGCAGCCTGTGGCTAAAAGCCTAGAGCAGGCGAAATACGAAGTTCGTCACGGCCTGTCTTATTC
CAAGTTTAAGTGTGAATACAATGGCATTGTTGCCAACAAAACCCTGTTTGTACCAAAAGGTGAAGACGCGGAAGTTTGGG
ACGTTGAAATCGAGAACACCTCTGACGAAGTGCGCACCATCAGTGCATTCAACTACGTCGAGTTTTCTTTCAGCCACATT
AAATCGGACAACCAAAACCATCAGATGTCCTTGTACTCTGCAGGTACCGAGTACAAAGATGGCGTGATTGAGTACGATCT
ATACTACAACACCGACGACTTCTTAGGTTTCTACTACCTGACAGCCACGTTTGATGCTGACAGCTACGACGGCCAACGCG
ATGTCTTCCTCGGTATGTACCGCGACGAAGCAAACCCAATCGCTGTGGCACAAGGTAAGTGTTCTAACACTGCACAAACC
TGTTACAACCACTGTGGCGCGTTGCACAAACAATTCGTTCTACAACCTGGCGAAAAAGTACGCTTTGCAGTGATCTTAGG
TGTAGGTAAAGGTAATGGCGCAAAACTGCGCGAGAAATACCAAGATCTCACTAAAGTCGATCAAGCCTTTGCTGGTATCA
AAGCGCACTGGGACGAGCGCTGTGAGAAGTTCCAAGTGAAATCACCAAACGCAGGTTTGGATACCATGATCAACGCATGG
ACTCTATACCAAGCAGAAACGTGTGTGGTGTGGTCTCGCTTTGCCTCTTTCATTGAAGTGGGTGGCCGCACAGGCTTGGG
TTACCGCGATACCGCGCAAGACGCAATTTCGGTTCCTCACACCAACCCAGCAATGACGCGCAAACGCTTGGTTGATCTGC
TTCGCGGCCAAGTGAAAGCGGGATACGGTTTACACCTATTTGATCCAGATTGGTTCGATCCAGAAAAAGCGGATGTTAAA
CCATCAAAATCACCAACCGTTGTCCCAACACCATCTGACGATGACAAGATCCACGGTATCAAAGACACCTGTTCCGACGA
TCACCTATGGATCGTGCCAACCATCTTGAACTATGTGAAAGAGACGGGCGATATCGGCTTTATTGATGAAGTGATTCCTT
ATGCAGACGGCGGCAACGCGACTGTGTATGAACACATGATGGCGGCACTGGATTTCTCCGCAGAATACGTCGGTCAAACG
GGTATCTGTAAAGGTCTACGCGCAGACTGGAACGACTGTCTAAACCTAGGTGGTGGTGAGTCTTCCATGGTGTCATTCCT
GCATTTCTGGGCACTGGAAGCCTTCCTAGAGCTTTCTCGCTTCCGTAATGACGAAGCGGCGACAGACAAATACCAAGCGA
TGGCAAGCGGCGTTCGTGAAGCGTGTGAAACTCATTTGTGGGATGAGAAAGGCGAATGGTACATCCGTGGTTTGACCAAA
GATGGCGACAAGATCGGTACCTTCGACCAAGTGGAAGGCAAAGTGCACCTTGAGTCAAACTCGCTGGCAGTACTGTCTGG
CGCAGTCAGCCACGAGCGCGGCATCAAGGCGATGGACGCGGTATACGAGTACCTGTTCTCGAAATACGGCCTACACCTAA
ACGCACCATCGTTCGCGACACCAAACGATGATATTGGTTTCGTCACTCGCGTTTACCAAGGCGTGAAAGAAAACGGCGCT
ATCTTCTCGCATCCAAACCCATGGGCTTGGGTTGCAGAAGCGAAACTGGGCCGTGGTGATCGCGCAATGGAGCTTTACGA
CTCACTCAACCCATACAACCAAAACGACATCATTGAAACGCGCATGGCAGAACCGTACTCCTACGTTCAGTTCATCATGG
GCCGTGACCACCAAGACCATGGTCGTGCAAACCACCCTTGGTTAACGGGAACCTCAGGTTGGGCTTACTACGCCACCACC
AACTTCATTCTCGGTGTGCGTACTGGTTTTGATTCACTTGAGATCGACCCATGTATTCCAACAGCGTGGCCTGGTTTTGA
AGTGACTCGTCAATGGCGTGGCGCGACTTACCAAATCAAAGTCGAAAACCCACAAGGTGTTTCTAAGGGCGTTAAATCCA
TCACATTAAATGGTCAAGCGATCGAAGGTGCCGTTCCTGCGCAGGCAGAAGGCACCGTGAATGAGGTTGTGGTCGTTTTG
GGTTAA

Upstream 100 bases:

>100_bases
ATGGAAATGAACAACCGAATGAAAGCCTCGCTTTCCTAAGTTTTCACTAGCTTTAGTTTTTGACTGCCTTACCAAGCAGT
TTGTTGAAAAGGAAATGACA

Downstream 100 bases:

>100_bases
TCCCATCACGTTATCGCTAGCAAATAGTTTGGGAAATGGCCTACGGGCCATTTCCTAAGGGAGATCGAATTATGATCAAA
TTTGGAACCGGTGGCTGGCG

Product: chitobiose phosphorylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 801; Mature: 801

Protein sequence:

>801_residues
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRPNFTQDRPGHYVYLRDDATGD
YWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIVANKTLFVPKGEDAEVWDVEIENTSDEVRTISAFNYVEFSFSHI
KSDNQNHQMSLYSAGTEYKDGVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDVFLGMYRDEANPIAVAQGKCSNTAQT
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLTKVDQAFAGIKAHWDERCEKFQVKSPNAGLDTMINAW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHTNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDDDKIHGIKDTCSDDHLWIVPTILNYVKETGDIGFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEAFLELSRFRNDEAATDKYQAMASGVREACETHLWDEKGEWYIRGLTK
DGDKIGTFDQVEGKVHLESNSLAVLSGAVSHERGIKAMDAVYEYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMELYDSLNPYNQNDIIETRMAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYYATT
NFILGVRTGFDSLEIDPCIPTAWPGFEVTRQWRGATYQIKVENPQGVSKGVKSITLNGQAIEGAVPAQAEGTVNEVVVVL
G

Sequences:

>Translated_801_residues
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRPNFTQDRPGHYVYLRDDATGD
YWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIVANKTLFVPKGEDAEVWDVEIENTSDEVRTISAFNYVEFSFSHI
KSDNQNHQMSLYSAGTEYKDGVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDVFLGMYRDEANPIAVAQGKCSNTAQT
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLTKVDQAFAGIKAHWDERCEKFQVKSPNAGLDTMINAW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHTNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDDDKIHGIKDTCSDDHLWIVPTILNYVKETGDIGFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEAFLELSRFRNDEAATDKYQAMASGVREACETHLWDEKGEWYIRGLTK
DGDKIGTFDQVEGKVHLESNSLAVLSGAVSHERGIKAMDAVYEYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMELYDSLNPYNQNDIIETRMAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYYATT
NFILGVRTGFDSLEIDPCIPTAWPGFEVTRQWRGATYQIKVENPQGVSKGVKSITLNGQAIEGAVPAQAEGTVNEVVVVL
G
>Mature_801_residues
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRPNFTQDRPGHYVYLRDDATGD
YWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIVANKTLFVPKGEDAEVWDVEIENTSDEVRTISAFNYVEFSFSHI
KSDNQNHQMSLYSAGTEYKDGVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDVFLGMYRDEANPIAVAQGKCSNTAQT
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLTKVDQAFAGIKAHWDERCEKFQVKSPNAGLDTMINAW
TLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPHTNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVK
PSKSPTVVPTPSDDDKIHGIKDTCSDDHLWIVPTILNYVKETGDIGFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEAFLELSRFRNDEAATDKYQAMASGVREACETHLWDEKGEWYIRGLTK
DGDKIGTFDQVEGKVHLESNSLAVLSGAVSHERGIKAMDAVYEYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGA
IFSHPNPWAWVAEAKLGRGDRAMELYDSLNPYNQNDIIETRMAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYYATT
NFILGVRTGFDSLEIDPCIPTAWPGFEVTRQWRGATYQIKVENPQGVSKGVKSITLNGQAIEGAVPAQAEGTVNEVVVVL
G

Specific function: Involved in the production of beta-(1,2)-glucan. It is involved not only in invasion but also in bacteroid development [H]

COG id: COG3459

COG function: function code G; Cellobiose phosphorylase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens ChvB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR009342
- InterPro:   IPR019282
- InterPro:   IPR021478
- InterPro:   IPR011013
- InterPro:   IPR010383
- InterPro:   IPR010403 [H]

Pfam domain/function: PF06204 CBM_X; PF10091 DUF2329; PF11329 DUF3131; PF06165 Glyco_transf_36; PF06205 GT36_AF [H]

EC number: NA

Molecular weight: Translated: 90019; Mature: 90019

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRP
CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHEEECCCCCEEEECCCCCCCEEEECC
NFTQDRPGHYVYLRDDATGDYWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIVANK
CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEECC
TLFVPKGEDAEVWDVEIENTSDEVRTISAFNYVEFSFSHIKSDNQNHQMSLYSAGTEYKD
EEEEECCCCCEEEEEEECCCCCHHEEEEEECEEEEEHHHHCCCCCCCEEEEEECCCCCCC
GVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDVFLGMYRDEANPIAVAQGKCSNTAQT
CEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHH
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLTKVDQAFAGIKAHWDER
HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEKFQVKSPNAGLDTMINAWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH
HHEEECCCCCCCHHHHHHEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
TNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVKPSKSPTVVPTPSDDDKIHGI
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
KDTCSDDHLWIVPTILNYVKETGDIGFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
CCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCC
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEAFLELSRFRNDEAATDKYQAMASGVRE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ACETHLWDEKGEWYIRGLTKDGDKIGTFDQVEGKVHLESNSLAVLSGAVSHERGIKAMDA
HHHHHCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEECCCCEEEEECCHHHHHCCHHHHH
VYEYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD
HHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC
RAMELYDSLNPYNQNDIIETRMAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYYATT
HHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEE
NFILGVRTGFDSLEIDPCIPTAWPGFEVTRQWRGATYQIKVENPQGVSKGVKSITLNGQA
EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCHHCCCEEEEECCCE
IEGAVPAQAEGTVNEVVVVLG
ECCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKYGYFDNDNREYVITRPDVPAPWTNYLGTEKFCTVISHNAGGYSFYHSPEYNRVTKFRP
CCCCCCCCCCCEEEEECCCCCCCHHHHCCCHHHHHEEECCCCCEEEECCCCCCCEEEECC
NFTQDRPGHYVYLRDDATGDYWSISWQPVAKSLEQAKYEVRHGLSYSKFKCEYNGIVANK
CCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEECC
TLFVPKGEDAEVWDVEIENTSDEVRTISAFNYVEFSFSHIKSDNQNHQMSLYSAGTEYKD
EEEEECCCCCEEEEEEECCCCCHHEEEEEECEEEEEHHHHCCCCCCCEEEEEECCCCCCC
GVIEYDLYYNTDDFLGFYYLTATFDADSYDGQRDVFLGMYRDEANPIAVAQGKCSNTAQT
CEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHH
CYNHCGALHKQFVLQPGEKVRFAVILGVGKGNGAKLREKYQDLTKVDQAFAGIKAHWDER
HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEKFQVKSPNAGLDTMINAWTLYQAETCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH
HHEEECCCCCCCHHHHHHEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
TNPAMTRKRLVDLLRGQVKAGYGLHLFDPDWFDPEKADVKPSKSPTVVPTPSDDDKIHGI
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
KDTCSDDHLWIVPTILNYVKETGDIGFIDEVIPYADGGNATVYEHMMAALDFSAEYVGQT
CCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCHHHCCCC
GICKGLRADWNDCLNLGGGESSMVSFLHFWALEAFLELSRFRNDEAATDKYQAMASGVRE
HHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ACETHLWDEKGEWYIRGLTKDGDKIGTFDQVEGKVHLESNSLAVLSGAVSHERGIKAMDA
HHHHHCCCCCCCEEEEEECCCCCCCCCHHHCCCEEEECCCCEEEEECCHHHHHCCHHHHH
VYEYLFSKYGLHLNAPSFATPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAEAKLGRGD
HHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCC
RAMELYDSLNPYNQNDIIETRMAEPYSYVQFIMGRDHQDHGRANHPWLTGTSGWAYYATT
HHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEE
NFILGVRTGFDSLEIDPCIPTAWPGFEVTRQWRGATYQIKVENPQGVSKGVKSITLNGQA
EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCHHCCCEEEEECCCE
IEGAVPAQAEGTVNEVVVVLG
ECCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2154461; 11481430 [H]