Click here to switch to the map view.

The map label for this gene is yjgF [H]

Identifier: 27364847

GI number: 27364847

Start: 1450749

End: 1451138

Strand: Reverse

Name: yjgF [H]

Synonym: VV1_1463

Alternate gene names: 27364847

Gene position: 1451138-1450749 (Counterclockwise)

Preceding gene: 27364848

Following gene: 27364842

Centisome position: 44.22

GC content: 51.03

Gene sequence:

>390_bases
ATGACTAAAGTACTTCATACAGACTCAGCACCTGCTGCAATCGGCCCATACATCCAAGGCGTAGACCTAGGCAATATGGT
ACTGACCTCTGGCCAAATCCCAGTAAACCCAGCAACAGGCGAAGTGCCAGCAGACATCGCAGCGCAAGCTCGCCAATCGC
TCGACAACGTCAAAGCGGTGGTCGAAGCCTCTGGCCTGACTGTAGGCGACATCGTGAAAATGACGGTATTCGTTAAAGAT
CTCAACGATTTTGGCACAGTAAATGAGGTGTATGGTAACTTCTTCGACGAGCACAACGTCGCGCACTACCCAGCACGTTC
ATGTGTGGAAGTGGCTCGTCTACCAAAAGACGTGGGCATCGAAATCGAAGCGATCGCGGTTCGTAAATAA

Upstream 100 bases:

>100_bases
ATCCCCGCCTACCTAGCGGGGATTTTTTCTTTACCAATCATTTCTTTCACGGCACACTGAACGCTCTTTGTTTTCCTTGC
AATCAAGACGGAACATAATA

Downstream 100 bases:

>100_bases
TCGCCAATCCAACCGATTTTAAAGGGTGACATCAGGTCACCCTTTTTCATTGCTGCTCGCTACACCAAACGGTTGAGCGT
TTCGCCTCGCCAATAGGCGT

Product: Endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKD
LNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVRK

Sequences:

>Translated_129_residues
MTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKD
LNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVRK
>Mature_128_residues
TKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDL
NDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVRK

Specific function: May have a phosphotransferase activity [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=129, Percent_Identity=41.0852713178295, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=79.8449612403101, Blast_Score=213, Evalue=2e-57,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=71.875, Blast_Score=196, Evalue=3e-52,
Organism=Escherichia coli, GI1787245, Length=116, Percent_Identity=28.448275862069, Blast_Score=61, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=41.6, Blast_Score=107, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=41.6, Blast_Score=107, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=41.6, Blast_Score=107, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=41.4634146341463, Blast_Score=94, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6320899, Length=107, Percent_Identity=42.9906542056075, Blast_Score=92, Evalue=3e-20,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=42.0634920634921, Blast_Score=96, Evalue=7e-21,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13690; Mature: 13559

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAV
CCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGI
HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCE
EIEAIAVRK
EEEEEEECC
>Mature Secondary Structure 
TKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAV
CCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGI
HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCE
EIEAIAVRK
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]