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The map label for this gene is yrdA [H]

Identifier: 27364491

GI number: 27364491

Start: 1059725

End: 1060291

Strand: Reverse

Name: yrdA [H]

Synonym: VV1_1059

Alternate gene names: 27364491

Gene position: 1060291-1059725 (Counterclockwise)

Preceding gene: 27364497

Following gene: 27364486

Centisome position: 32.31

GC content: 44.44

Gene sequence:

>567_bases
ATGAGTTCGATTAGAAGTTATAAAGGCATTCATCCCCAAATAGGCGAACGCGTCTATATCGATTCAACCTCAGTCATTGT
CGGTGATATTCGAATAGGTGATGATTCGAGTATTTGGCCATTGGTTGCGGCACGTGGCGATGTTAACCATATCCACATCG
GAGCTCGCACTAACATTCAAGATGGCAGCGTGCTGCACGTGACCCATAAAAACGCAGAAAATCCTCATGGCTACCCTTTG
CTGATTGGTAATGACGTGACCATTGGCCACAAAGTGATGCTGCACGGCTGCGATATTCACGATCGTGTGTTGGTTGGTAT
GGGGGCGATTGTTTTAGATGATGTCGTGGTTGAATCGGACGTGATGATTGGTGCGGGCAGTCTAGTACCGCCAGGGAAAA
GATTAGAAAGCGGCTATCTTTATGTTGGTAGCCCAATAAAACAAGCTCGCCCTCTATCAGAGAAAGAACGAGCTTTTTTA
CTAAAGTCAGCGGACAACTATGTCCAAAACAAGAATGACTATTTAACTGAAGTAAAAGACCTTCATGAAAGACAAACTAA
TCGATAA

Upstream 100 bases:

>100_bases
TGATTTTTCTATCGTTTGAGTGTTTTTTATTCTAAACGATGAGTTTTTGCTACTCTTCTCACCCGATATCACCATTCATC
AGGCTTTATTAGGAGGAAAA

Downstream 100 bases:

>100_bases
TGATATGGCCTTCTTCGTTGAAGGCTTCATCTTCTATTAACTCTTCTGCTATTTCTTCCAGATCAAATCGGTAATCAATA
AAAGCAGCGATCACCGCTTG

Product: carbonic anhydrase, family 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSSIRSYKGIHPQIGERVYIDSTSVIVGDIRIGDDSSIWPLVAARGDVNHIHIGARTNIQDGSVLHVTHKNAENPHGYPL
LIGNDVTIGHKVMLHGCDIHDRVLVGMGAIVLDDVVVESDVMIGAGSLVPPGKRLESGYLYVGSPIKQARPLSEKERAFL
LKSADNYVQNKNDYLTEVKDLHERQTNR

Sequences:

>Translated_188_residues
MSSIRSYKGIHPQIGERVYIDSTSVIVGDIRIGDDSSIWPLVAARGDVNHIHIGARTNIQDGSVLHVTHKNAENPHGYPL
LIGNDVTIGHKVMLHGCDIHDRVLVGMGAIVLDDVVVESDVMIGAGSLVPPGKRLESGYLYVGSPIKQARPLSEKERAFL
LKSADNYVQNKNDYLTEVKDLHERQTNR
>Mature_187_residues
SSIRSYKGIHPQIGERVYIDSTSVIVGDIRIGDDSSIWPLVAARGDVNHIHIGARTNIQDGSVLHVTHKNAENPHGYPLL
IGNDVTIGHKVMLHGCDIHDRVLVGMGAIVLDDVVVESDVMIGAGSLVPPGKRLESGYLYVGSPIKQARPLSEKERAFLL
KSADNYVQNKNDYLTEVKDLHERQTNR

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=174, Percent_Identity=66.0919540229885, Blast_Score=243, Evalue=5e-66,
Organism=Escherichia coli, GI1787667, Length=191, Percent_Identity=32.9842931937173, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87081681, Length=192, Percent_Identity=29.1666666666667, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20665; Mature: 20534

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIRSYKGIHPQIGERVYIDSTSVIVGDIRIGDDSSIWPLVAARGDVNHIHIGARTNIQ
CCCCCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCC
DGSVLHVTHKNAENPHGYPLLIGNDVTIGHKVMLHGCDIHDRVLVGMGAIVLDDVVVESD
CCCEEEEEECCCCCCCCCEEEECCCEEECEEEEEECCCCCCHHHHHCCHHHHHHHHCCCC
VMIGAGSLVPPGKRLESGYLYVGSPIKQARPLSEKERAFLLKSADNYVQNKNDYLTEVKD
EEEECCCCCCCCCCCCCCEEEECCCHHHCCCCCCHHHEEEEECCCHHHCCCCHHHHHHHH
LHERQTNR
HHHHHCCC
>Mature Secondary Structure 
SSIRSYKGIHPQIGERVYIDSTSVIVGDIRIGDDSSIWPLVAARGDVNHIHIGARTNIQ
CCCCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCC
DGSVLHVTHKNAENPHGYPLLIGNDVTIGHKVMLHGCDIHDRVLVGMGAIVLDDVVVESD
CCCEEEEEECCCCCCCCCEEEECCCEEECEEEEEECCCCCCHHHHHCCHHHHHHHHCCCC
VMIGAGSLVPPGKRLESGYLYVGSPIKQARPLSEKERAFLLKSADNYVQNKNDYLTEVKD
EEEECCCCCCCCCCCCCCEEEECCCHHHCCCCCCHHHEEEEECCCHHHCCCCHHHHHHHH
LHERQTNR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]