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The map label for this gene is kdkA

Identifier: 27364263

GI number: 27364263

Start: 823650

End: 824360

Strand: Reverse

Name: kdkA

Synonym: VV1_0814

Alternate gene names: 27364263

Gene position: 824360-823650 (Counterclockwise)

Preceding gene: 27364264

Following gene: 27364262

Centisome position: 25.12

GC content: 46.41

Gene sequence:

>711_bases
ATGATTGAACAACAGCAGTTTGGTCAAAGTCGAATTTGTTACGACAGCGAATGGGTGAGTTCGCCAGAGCTGGCTTTATT
TGACCCGCAGTATTGGCAAGCACAAAACAAAGTGGTGGGAAGTGCCACTGGGCGCGGCACCACGTGGTTTGTGCAACTGC
CCAAGATCACAGCAGCACTGCGTCACTATCGTCGCGGTGGACTATTCGGCAAGTTGGTGAAAGATCACTATTGGTTTCAA
AGCTGGTCTGCAACACGCAGTTTCGCAGAATTTCATCTGCTTAAACAATTACGCGAAGCCGGGGTCAATGTACCGAGACC
GATCGCAGCCTATGCGATGAGAAAAGGGCTTTTTTACCAAGCGGACTTGCTGAGTGAACGCATTGCCAATGCGCAAGATT
TAGTGACCATACTGCAAAAACACTCACTGAGTGCGGAGCTTTACCAAAAAATCGGTGTCGAAATTGCGAAAATGCATCGC
GTTGGCGTCAATCATACCGATCTTAATATTCACAACATTCTGATTGATGCGCAGGAAACGATCTGGATTATCGATTTTGA
TAAATGCTATCCGCAAGCTGGGGATGGTTGGAAACAAGAGAACTTAGATCGACTCAAACGCTCATTTAACAAAGAGCGAG
TGAAGCGAAGTATTCACTGGCACGACAAAGATTTTCACGCCTTACTGACAGGCTACGAAAGTCAACAATAA

Upstream 100 bases:

>100_bases
TTGATTTTCGCTGGTTTTACATGGCTTTATATCGTTGGTAGTCACTATTGGTGGTAAAGCATGATTGGTGGTGGTAAAGC
ATGATTGGTGGTGGTAAAGC

Downstream 100 bases:

>100_bases
TCGCTATTCTCATTAATAGACGTAAGTCTCAGGAAGTTAGTTACATGTCTTTTAAGCAAAAGCTGCACGCTCACGGCTGG
TTTATTCTAATTAACGCTTT

Product: 3-deoxy-D-manno-octulosonic-acid kinase

Products: NA

Alternate protein names: KDO kinase

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAALRHYRRGGLFGKLVKDHYWFQ
SWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQADLLSERIANAQDLVTILQKHSLSAELYQKIGVEIAKMHR
VGVNHTDLNIHNILIDAQETIWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFHALLTGYESQQ

Sequences:

>Translated_236_residues
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAALRHYRRGGLFGKLVKDHYWFQ
SWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQADLLSERIANAQDLVTILQKHSLSAELYQKIGVEIAKMHR
VGVNHTDLNIHNILIDAQETIWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFHALLTGYESQQ
>Mature_236_residues
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAALRHYRRGGLFGKLVKDHYWFQ
SWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQADLLSERIANAQDLVTILQKHSLSAELYQKIGVEIAKMHR
VGVNHTDLNIHNILIDAQETIWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFHALLTGYESQQ

Specific function: ATP-dependent phosphorylation of 3-deoxy-D-manno- octulosonic acid at the 4-OH position

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDKA_VIBVU (Q8DDZ1)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_759791.1
- ProteinModelPortal:   Q8DDZ1
- SMR:   Q8DDZ1
- GeneID:   1177754
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_0814
- HOGENOM:   HBG353234
- OMA:   VYHADLN
- ProtClustDB:   PRK01723
- BioCyc:   VVUL216895:VV1_0814-MONOMER
- HAMAP:   MF_00521
- InterPro:   IPR020636
- InterPro:   IPR022826
- InterPro:   IPR011009
- InterPro:   IPR010440
- InterPro:   IPR020659
- PANTHER:   PTHR22982
- PANTHER:   PTHR22982:SF43

Pfam domain/function: PF06293 Kdo; SSF56112 Kinase_like

EC number: NA

Molecular weight: Translated: 27463; Mature: 27463

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: ACT_SITE 167-167

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAAL
CCCCHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCEEECCCCCCEEEEEECHHHHHHH
RHYRRGGLFGKLVKDHYWFQSWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHH
ADLLSERIANAQDLVTILQKHSLSAELYQKIGVEIAKMHRVGVNHTDLNIHNILIDAQET
HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEEECCCE
IWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFHALLTGYESQQ
EEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MIEQQQFGQSRICYDSEWVSSPELALFDPQYWQAQNKVVGSATGRGTTWFVQLPKITAAL
CCCCHHCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCEEECCCCCCEEEEEECHHHHHHH
RHYRRGGLFGKLVKDHYWFQSWSATRSFAEFHLLKQLREAGVNVPRPIAAYAMRKGLFYQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHH
ADLLSERIANAQDLVTILQKHSLSAELYQKIGVEIAKMHRVGVNHTDLNIHNILIDAQET
HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEEEECCCE
IWIIDFDKCYPQAGDGWKQENLDRLKRSFNKERVKRSIHWHDKDFHALLTGYESQQ
EEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA