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The map label for this gene is yrbD [C]

Identifier: 27364140

GI number: 27364140

Start: 704457

End: 704945

Strand: Reverse

Name: yrbD [C]

Synonym: VV1_0683

Alternate gene names: 27364140

Gene position: 704945-704457 (Counterclockwise)

Preceding gene: 27364141

Following gene: 326423750

Centisome position: 21.48

GC content: 46.22

Gene sequence:

>489_bases
ATGCAACAAACACGTAAAACAGAATTATGGGTTGGCAGCTTTGTCTTGGCGGGAATTTGCGCAATTCTGGTCATGATTTT
TCAAGTCGCTGACGTAAAGGGGCTAGGCTCGGGCAATACTTACACGCTCAAAGCACAGTTTGACAACATCGGTAGTCTCA
AAGTGCGCTCGCCTGTGAAGGTGGGAGGGGTGGTGATTGGACGCGTATCCGACATTTCGTTGAATCCTGAAACTTTGGTG
CCTGTCGTATCGCTGTCGATCAACAGTCTCTACAACCAGTTTCCGGAAACCTCGAGTGTGCAGATACTAACATCCGGCTT
GATTGGTGAGCAGTATATTGGCTTAGTGCCAGGATTCGTTTTTGAAGACGAGCAGATGCTTAAAGATGGTGACTTTATTG
AAGACACCAAATCGGCATTGGTATTGGAAGATTTGATTGGCCAAGTGCTGTATAGCGTCGGCAACAAAGATGAAACTAAG
AAGGACTAA

Upstream 100 bases:

>100_bases
AAGGCATCAGTCGTGCGACGACTCGCACGGTGGTTCACTCTTCTTTAGCGGTGTTGGGGCTGGATTTTGTCCTCACTGCG
TTGATGTTTGGGAATTAAAC

Downstream 100 bases:

>100_bases
TTCGATGAAACGATTCTTTTTGACCTGTCTCTCGCTGTTGATGTCGCTTAATGTATTGGCGAGCACGGCAGTGGACAAAG
CCGAGCCGTATCAAATGATG

Product: ABC transporter periplasmic component YrbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MQQTRKTELWVGSFVLAGICAILVMIFQVADVKGLGSGNTYTLKAQFDNIGSLKVRSPVKVGGVVIGRVSDISLNPETLV
PVVSLSINSLYNQFPETSSVQILTSGLIGEQYIGLVPGFVFEDEQMLKDGDFIEDTKSALVLEDLIGQVLYSVGNKDETK
KD

Sequences:

>Translated_162_residues
MQQTRKTELWVGSFVLAGICAILVMIFQVADVKGLGSGNTYTLKAQFDNIGSLKVRSPVKVGGVVIGRVSDISLNPETLV
PVVSLSINSLYNQFPETSSVQILTSGLIGEQYIGLVPGFVFEDEQMLKDGDFIEDTKSALVLEDLIGQVLYSVGNKDETK
KD
>Mature_162_residues
MQQTRKTELWVGSFVLAGICAILVMIFQVADVKGLGSGNTYTLKAQFDNIGSLKVRSPVKVGGVVIGRVSDISLNPETLV
PVVSLSINSLYNQFPETSSVQILTSGLIGEQYIGLVPGFVFEDEQMLKDGDFIEDTKSALVLEDLIGQVLYSVGNKDETK
KD

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=164, Percent_Identity=54.8780487804878, Blast_Score=161, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17545; Mature: 17545

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQTRKTELWVGSFVLAGICAILVMIFQVADVKGLGSGNTYTLKAQFDNIGSLKVRSPVK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCE
VGGVVIGRVSDISLNPETLVPVVSLSINSLYNQFPETSSVQILTSGLIGEQYIGLVPGFV
ECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHCCCEE
FEDEQMLKDGDFIEDTKSALVLEDLIGQVLYSVGNKDETKKD
ECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQQTRKTELWVGSFVLAGICAILVMIFQVADVKGLGSGNTYTLKAQFDNIGSLKVRSPVK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEECCCCE
VGGVVIGRVSDISLNPETLVPVVSLSINSLYNQFPETSSVQILTSGLIGEQYIGLVPGFV
ECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHCCCEE
FEDEQMLKDGDFIEDTKSALVLEDLIGQVLYSVGNKDETKKD
ECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]