Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 27363526

GI number: 27363526

Start: 43339

End: 44811

Strand: Reverse

Name: ydiU [C]

Synonym: VV1_0039

Alternate gene names: 27363526

Gene position: 44811-43339 (Counterclockwise)

Preceding gene: 27363527

Following gene: 27363525

Centisome position: 1.37

GC content: 51.93

Gene sequence:

>1473_bases
ATGTCTCTTTGGTCGTCGGTGAAATTTGCTCAACGCTACGCTCAACTCCCCAAGGTATTTTATCGTTTGGTGACCCCTCA
ACCGCTCGACAATAACCGTTGGGTCATTTGGAATGGTGAACTCGCCCAAGGGTTTGCGTTACCCAAGCACGCTGACGATC
CACAACTGCTCTCTGTTTTCTCCGGTGCGGAGCCGTTTTCTGCCTTCAAGCCCTTAGCGATGAAATACGCTGGCCATCAG
TTTGGGGTGTACAACCCAGATTTAGGTGATGGAAGAGGCTTACTGCTGGGCGAAATGCAAAACCAGCAGGGGCAGTGGTT
CGATATTCATCTTAAAGGCGCAGGGCTGACGCCATTTTCTCGCATGGGAGATGGCCGAGCGGTGCTGCGTTCCACCCTTC
GTGAATACCTCTGCAGCGAAGCGATGGCCGCTCTTGGCATCGAGACAACGCGCGCGTTGGGCATGATGGTGAGCGACACG
CCCGTCTATCGTGAGCAAGTCGAGCAGGGCGCTTGTTTGATTCGTCTTGCCCAAACGCACATCCGCTTTGGTCATTTCGA
GCATTTTTTCTATACCGAACAATATGATGAGTTGCGCCTTCTCGCTGACAATGTCATCGAATGGTACATGCCTGAGTGCA
CCGCACACGACAAACCGTATTTGGCGATGTTTGAACAAGTGGTGGCGCGCACAGCGACCATGATTGCCCAGTGGCAGGCG
GTGGGGTTTGCTCATGGGGTGATGAACACCGACAACATGTCGATTTTGGGTCAAACCTTCGATTACGGTCCGTTTGGTTT
CCTCGATGATTATGAACCAGGTTACATCTGTAACCACTCTGATTATCAAGGCCGTTACGCGTTTGACCAACAGCCTCGTG
TGGCACTGTGGAATCTCTCTGCACTGGCGCATGCCTTATCACCCTTAATTGAACGTGACGACTTGGAACTGGCCTTGGCT
CAGTACGAACCGACACTCGGTAAGGTGTTTAGTCAATTGATGAGGCAAAAGCTCGGTTTGCTTAGCCAGCAAGAGGGAGA
CAGCGAGCTATTTAACGCCATGTTTGCTTTGTTGGCGGAGAATCACACCGACTACACGCGCTTCTTTCGTACCCTTTCTC
AACTCGATAGGGAGGATGAACAAACGGTGATCGATCTGTTTATTGACCGAGACGCCGCCCATGGTTGGCTAAGCCGTTAC
CTTGAACGGGTGGCGATGGAGCAAACCGCCTCTGGAGAGGCGAAATCTGCCCAGCAACGTTGTGAGCAAATGCGCGCCGT
CAATCCTAAGTACATTTTGCGCAATTATCTCGCGCAACAGGCGATCGACAAAGCGCAGCAGGGCGATTTTTCGGAGGTGC
ATACCCTAGCCAAGCTACTGAAAAATCCCTATGACGAGCAAGCCGAAATGGAAGCGTATGCTCACCTTCCTCCTGAATGG
GGTAAGAAGATGGTCATCAGTTGCTCTTCTTAA

Upstream 100 bases:

>100_bases
TGGTCGCGCAGTTCAAAGTTTAGAGCCCCTGATTTCTCTCGGTGTTTGTCGAGAGAAGTCTGTGGTAGCGTAGCGAAAAA
CTCATCAGGAAGAATGCGCT

Downstream 100 bases:

>100_bases
GTTATGCCTGCTATACCCTTCCTACTTGAAGCTGCAGCGGTGTTGGCTGCATTCGTTCACTGGCACGCCAGCCCGGCCCA
ATCACATAGCGTATCTATGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MSLWSSVKFAQRYAQLPKVFYRLVTPQPLDNNRWVIWNGELAQGFALPKHADDPQLLSVFSGAEPFSAFKPLAMKYAGHQ
FGVYNPDLGDGRGLLLGEMQNQQGQWFDIHLKGAGLTPFSRMGDGRAVLRSTLREYLCSEAMAALGIETTRALGMMVSDT
PVYREQVEQGACLIRLAQTHIRFGHFEHFFYTEQYDELRLLADNVIEWYMPECTAHDKPYLAMFEQVVARTATMIAQWQA
VGFAHGVMNTDNMSILGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFDQQPRVALWNLSALAHALSPLIERDDLELALA
QYEPTLGKVFSQLMRQKLGLLSQQEGDSELFNAMFALLAENHTDYTRFFRTLSQLDREDEQTVIDLFIDRDAAHGWLSRY
LERVAMEQTASGEAKSAQQRCEQMRAVNPKYILRNYLAQQAIDKAQQGDFSEVHTLAKLLKNPYDEQAEMEAYAHLPPEW
GKKMVISCSS

Sequences:

>Translated_490_residues
MSLWSSVKFAQRYAQLPKVFYRLVTPQPLDNNRWVIWNGELAQGFALPKHADDPQLLSVFSGAEPFSAFKPLAMKYAGHQ
FGVYNPDLGDGRGLLLGEMQNQQGQWFDIHLKGAGLTPFSRMGDGRAVLRSTLREYLCSEAMAALGIETTRALGMMVSDT
PVYREQVEQGACLIRLAQTHIRFGHFEHFFYTEQYDELRLLADNVIEWYMPECTAHDKPYLAMFEQVVARTATMIAQWQA
VGFAHGVMNTDNMSILGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFDQQPRVALWNLSALAHALSPLIERDDLELALA
QYEPTLGKVFSQLMRQKLGLLSQQEGDSELFNAMFALLAENHTDYTRFFRTLSQLDREDEQTVIDLFIDRDAAHGWLSRY
LERVAMEQTASGEAKSAQQRCEQMRAVNPKYILRNYLAQQAIDKAQQGDFSEVHTLAKLLKNPYDEQAEMEAYAHLPPEW
GKKMVISCSS
>Mature_489_residues
SLWSSVKFAQRYAQLPKVFYRLVTPQPLDNNRWVIWNGELAQGFALPKHADDPQLLSVFSGAEPFSAFKPLAMKYAGHQF
GVYNPDLGDGRGLLLGEMQNQQGQWFDIHLKGAGLTPFSRMGDGRAVLRSTLREYLCSEAMAALGIETTRALGMMVSDTP
VYREQVEQGACLIRLAQTHIRFGHFEHFFYTEQYDELRLLADNVIEWYMPECTAHDKPYLAMFEQVVARTATMIAQWQAV
GFAHGVMNTDNMSILGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFDQQPRVALWNLSALAHALSPLIERDDLELALAQ
YEPTLGKVFSQLMRQKLGLLSQQEGDSELFNAMFALLAENHTDYTRFFRTLSQLDREDEQTVIDLFIDRDAAHGWLSRYL
ERVAMEQTASGEAKSAQQRCEQMRAVNPKYILRNYLAQQAIDKAQQGDFSEVHTLAKLLKNPYDEQAEMEAYAHLPPEWG
KKMVISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=546, Percent_Identity=35.8974358974359, Blast_Score=297, Evalue=1e-80,
Organism=Escherichia coli, GI1787999, Length=487, Percent_Identity=50.1026694045174, Blast_Score=478, Evalue=1e-136,
Organism=Saccharomyces cerevisiae, GI6325034, Length=344, Percent_Identity=36.046511627907, Blast_Score=192, Evalue=8e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y039_VIBVU (Q8DG12)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_759054.1
- GeneID:   1176995
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_0039
- HOGENOM:   HBG683993
- OMA:   THIRFGH
- ProtClustDB:   PRK00029
- BioCyc:   VVUL216895:VV1_0039-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 55850; Mature: 55719

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLWSSVKFAQRYAQLPKVFYRLVTPQPLDNNRWVIWNGELAQGFALPKHADDPQLLSVF
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHCCCCCCCCCCCHHHHHHH
SGAEPFSAFKPLAMKYAGHQFGVYNPDLGDGRGLLLGEMQNQQGQWFDIHLKGAGLTPFS
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHH
RMGDGRAVLRSTLREYLCSEAMAALGIETTRALGMMVSDTPVYREQVEQGACLIRLAQTH
HCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
IRFGHFEHFFYTEQYDELRLLADNVIEWYMPECTAHDKPYLAMFEQVVARTATMIAQWQA
HHHCCHHHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VGFAHGVMNTDNMSILGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFDQQPRVALWNLS
HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEHHH
ALAHALSPLIERDDLELALAQYEPTLGKVFSQLMRQKLGLLSQQEGDSELFNAMFALLAE
HHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
NHTDYTRFFRTLSQLDREDEQTVIDLFIDRDAAHGWLSRYLERVAMEQTASGEAKSAQQR
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
CEQMRAVNPKYILRNYLAQQAIDKAQQGDFSEVHTLAKLLKNPYDEQAEMEAYAHLPPEW
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHH
GKKMVISCSS
CCEEEEEECC
>Mature Secondary Structure 
SLWSSVKFAQRYAQLPKVFYRLVTPQPLDNNRWVIWNGELAQGFALPKHADDPQLLSVF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHCCCCCCCCCCCHHHHHHH
SGAEPFSAFKPLAMKYAGHQFGVYNPDLGDGRGLLLGEMQNQQGQWFDIHLKGAGLTPFS
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCHH
RMGDGRAVLRSTLREYLCSEAMAALGIETTRALGMMVSDTPVYREQVEQGACLIRLAQTH
HCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHH
IRFGHFEHFFYTEQYDELRLLADNVIEWYMPECTAHDKPYLAMFEQVVARTATMIAQWQA
HHHCCHHHHEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VGFAHGVMNTDNMSILGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFDQQPRVALWNLS
HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEHHH
ALAHALSPLIERDDLELALAQYEPTLGKVFSQLMRQKLGLLSQQEGDSELFNAMFALLAE
HHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
NHTDYTRFFRTLSQLDREDEQTVIDLFIDRDAAHGWLSRYLERVAMEQTASGEAKSAQQR
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
CEQMRAVNPKYILRNYLAQQAIDKAQQGDFSEVHTLAKLLKNPYDEQAEMEAYAHLPPEW
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHH
GKKMVISCSS
CCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA