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The map label for this gene is yiaM [C]

Identifier: 27363518

GI number: 27363518

Start: 34225

End: 34905

Strand: Reverse

Name: yiaM [C]

Synonym: VV1_0029

Alternate gene names: 27363518

Gene position: 34905-34225 (Counterclockwise)

Preceding gene: 27363519

Following gene: 27363517

Centisome position: 1.06

GC content: 47.28

Gene sequence:

>681_bases
ATGAGCGAATCGATTATGGAACAATCACTTTTGGCAAAAATTGGTCACTTCACCGATCGGGTAGAAGAAGGGCTGATTGC
ATTTTTCCTTGGTGCCATGACACTGCTGACTTTCGTCAATGTTGTGATGCGCTATCTCTTTAACGACAACATTCTATGGG
CCCTTGAACTTACCGTATTTATGTTCGCGTGGATGGTGTTGGTCGGCGCGTCTTATGGTGTGAAGAAACACTTCCACATC
GGTGTGGATGTGGTGATTGATAAAGCCCCACCACCGTTACGCAAAGTGCTGGCCTTGGTGGCCGTCAGTTGTTGCTTAAC
CTTTTCTATTTTACTTTTGATTGGCTCTTGGAATTACTGGTACCCCTTTGCGACTGAGCGTGCTTGGTATGAAACCGACG
ATATCCCGATGCCTGAGATTTTTCAGTTTATGTCGGATTGGTTCAATGAAGGCGAAGCGTACGAGAAGATCCCCCGTTTT
ATTCCTTACATGGCACTTCCCGTTGGGATGGCGTTGCTGACGTTTCGTTTTTTGCAGGTCGCGTGGCGAATTCTGAACAA
TCAACAAGATCGCATGATCGCGGGTCATGAGGCAGAAGAAGATCTTGAAGCATTGAAAGCGGAGATGGGTGATGCCGACG
ATTTGATGGGTGGTTCACGTCGTGATGGTAAGGAGCAGTAA

Upstream 100 bases:

>100_bases
ACATCGGTTCAGATCTGATTGATGCAGCATTGGCGTCAAACAAACAATAAATAAGAACGGGCTCTGACGGTCGAGTCAGA
GCCCAGTTTTTAGCACAATA

Downstream 100 bases:

>100_bases
GCGATGGATATTCTATTTTTATTTTTGTTAGTCATTGGCTTTATGCTGATTGGCGTGCCTATCGCGGTTTCTCTCGGCTT
ATCGAGCATTCTGTTTTTGA

Product: TRAP-type C4-dicarboxylate transport system, small permease

Products: NA

Alternate protein names: Trap Transporter Dctq Subunit; C4-Dicarboxylate Transport System Permease Small Subunit; C4-Dicarboxylate Transporter; C4-Dicarboxylate Transport Protein DctQ; TRAP Transporter DctQ-Like Membrane Protein; ABC Transporter; TRAP-Type C4-Dicarboxylate Transport System Small Permease; Dicarboxylate Transporter; Tripartite ATP-Independent Periplasmic Transporter; C4-Dicarboxylate Transport System; C4-Dicarboxylate Transport System Small Permease Component; Transporter-Like Membrane Protein; C4-Dicarboxylate Transporter Small Permease Component; TRAP-Type C4-Dicarboxylate Transport System; C4-Dicarboxylate Transport System Permease Protein; TRAP Dicarboxylate Family Transporter DctQ Subunit; C4-Dicarboxylate Transporter Small Subunit; TRAP-Type C4-Dicarboxylate Transporter Small Permease; TRAP Transporter DctQ Subunit; ArsR Family Transcriptional Regulator

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSESIMEQSLLAKIGHFTDRVEEGLIAFFLGAMTLLTFVNVVMRYLFNDNILWALELTVFMFAWMVLVGASYGVKKHFHI
GVDVVIDKAPPPLRKVLALVAVSCCLTFSILLLIGSWNYWYPFATERAWYETDDIPMPEIFQFMSDWFNEGEAYEKIPRF
IPYMALPVGMALLTFRFLQVAWRILNNQQDRMIAGHEAEEDLEALKAEMGDADDLMGGSRRDGKEQ

Sequences:

>Translated_226_residues
MSESIMEQSLLAKIGHFTDRVEEGLIAFFLGAMTLLTFVNVVMRYLFNDNILWALELTVFMFAWMVLVGASYGVKKHFHI
GVDVVIDKAPPPLRKVLALVAVSCCLTFSILLLIGSWNYWYPFATERAWYETDDIPMPEIFQFMSDWFNEGEAYEKIPRF
IPYMALPVGMALLTFRFLQVAWRILNNQQDRMIAGHEAEEDLEALKAEMGDADDLMGGSRRDGKEQ
>Mature_225_residues
SESIMEQSLLAKIGHFTDRVEEGLIAFFLGAMTLLTFVNVVMRYLFNDNILWALELTVFMFAWMVLVGASYGVKKHFHIG
VDVVIDKAPPPLRKVLALVAVSCCLTFSILLLIGSWNYWYPFATERAWYETDDIPMPEIFQFMSDWFNEGEAYEKIPRFI
PYMALPVGMALLTFRFLQVAWRILNNQQDRMIAGHEAEEDLEALKAEMGDADDLMGGSRRDGKEQ

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25925; Mature: 25793

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESIMEQSLLAKIGHFTDRVEEGLIAFFLGAMTLLTFVNVVMRYLFNDNILWALELTVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MFAWMVLVGASYGVKKHFHIGVDVVIDKAPPPLRKVLALVAVSCCLTFSILLLIGSWNYW
HHHHHHHHHCCCCCCHHEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YPFATERAWYETDDIPMPEIFQFMSDWFNEGEAYEKIPRFIPYMALPVGMALLTFRFLQV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWRILNNQQDRMIAGHEAEEDLEALKAEMGDADDLMGGSRRDGKEQ
HHHHHCCCCHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SESIMEQSLLAKIGHFTDRVEEGLIAFFLGAMTLLTFVNVVMRYLFNDNILWALELTVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MFAWMVLVGASYGVKKHFHIGVDVVIDKAPPPLRKVLALVAVSCCLTFSILLLIGSWNYW
HHHHHHHHHCCCCCCHHEEECEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
YPFATERAWYETDDIPMPEIFQFMSDWFNEGEAYEKIPRFIPYMALPVGMALLTFRFLQV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWRILNNQQDRMIAGHEAEEDLEALKAEMGDADDLMGGSRRDGKEQ
HHHHHCCCCHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA