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The map label for this gene is sigO

Identifier: 255767760

GI number: 255767760

Start: 3409462

End: 3409992

Strand: Reverse

Name: sigO

Synonym: BSU33230

Alternate gene names: 255767760

Gene position: 3409992-3409462 (Counterclockwise)

Preceding gene: 255767762

Following gene: 255767759

Centisome position: 80.89

GC content: 42.37

Gene sequence:

>531_bases
ATGAAGCATCCCATCGTGAAGCATTTTTTGAGCAATCCTCAGCATTACCGTTTGTTCAAAAACGTAATGGAAAGCCCTAA
CGAAAAAGATGCAAGATCATTGGACGAGCTATTTAAGCAATTTTATAAAGAAATCCGCATCGTCAAGTATATGAATTCAA
TGATTCGCATCTTTTCTATTGATTTTGATAAGCGGGTTCGCAAAAACCAAAAACGGTATCCACTGACGGTTGATCATCCG
GAGGCGGGAGATCGGCTTTCTTCCGAAACAGGTAGCGATGCATTTGAAGAATTTTTAGACAGGCAGGATGATTTGAGCCA
GCATGTACAGGATTACCAGCTCTACCAAGCGATCCAGAAGCTGACTGACAAACAAAAAAGTGTGCTGACGAAAGTCTATC
TTCACGGTGCCACGATGCAGGAGATTGCAGATTCATTAGGGGAGTCCCGACAAAACATCTCCAACATTCATAAAAAGGGG
CTGGAGAATATCAGAAAGCAGTTAGCGGCGCAAAAAAAGGGGGAAAAGTAA

Upstream 100 bases:

>100_bases
AAGTAGTAGTTTACTTTTTTTTGCTTTCCTTCATTTAATTTAGTAGGGAGGCGGTTTGATGGACTATCAAAGTCTTTTAC
GGTCAAAATGTAAGGAGATA

Downstream 100 bases:

>100_bases
GCTGTGGACGGCCAGTTTGAACAAAAAAAGAAACAAAAAGACGAGACTTATGACATTGAGCACCTGATTGCATGCTTTTC
ACCGATGATCAGAAAAAAAC

Product: alternative sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MKHPIVKHFLSNPQHYRLFKNVMESPNEKDARSLDELFKQFYKEIRIVKYMNSMIRIFSIDFDKRVRKNQKRYPLTVDHP
EAGDRLSSETGSDAFEEFLDRQDDLSQHVQDYQLYQAIQKLTDKQKSVLTKVYLHGATMQEIADSLGESRQNISNIHKKG
LENIRKQLAAQKKGEK

Sequences:

>Translated_176_residues
MKHPIVKHFLSNPQHYRLFKNVMESPNEKDARSLDELFKQFYKEIRIVKYMNSMIRIFSIDFDKRVRKNQKRYPLTVDHP
EAGDRLSSETGSDAFEEFLDRQDDLSQHVQDYQLYQAIQKLTDKQKSVLTKVYLHGATMQEIADSLGESRQNISNIHKKG
LENIRKQLAAQKKGEK
>Mature_176_residues
MKHPIVKHFLSNPQHYRLFKNVMESPNEKDARSLDELFKQFYKEIRIVKYMNSMIRIFSIDFDKRVRKNQKRYPLTVDHP
EAGDRLSSETGSDAFEEFLDRQDDLSQHVQDYQLYQAIQKLTDKQKSVLTKVYLHGATMQEIADSLGESRQNISNIHKKG
LENIRKQLAAQKKGEK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Together with its coactivator rsoA, positively regulates the expression of at least three operons, including oxdC-yvrL,

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SIGO_BACSU (O34843)

Other databases:

- EMBL:   AJ223978
- EMBL:   AL009126
- RefSeq:   NP_391203.2
- HSSP:   P67248
- ProteinModelPortal:   O34843
- SMR:   O34843
- DIP:   DIP-49019N
- EnsemblBacteria:   EBBACT00000002760
- GeneID:   935983
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33230
- GenoList:   BSU33230
- GeneTree:   EBGT00050000001462
- HOGENOM:   HBG338312
- ProtClustDB:   CLSK887864
- BioCyc:   BSUB:BSU33230-MONOMER
- InterPro:   IPR014284
- InterPro:   IPR007630
- InterPro:   IPR013324
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- TIGRFAMs:   TIGR02937

Pfam domain/function: PF04545 Sigma70_r4; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 20757; Mature: 20757

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00715 SIGMA70_1; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHPIVKHFLSNPQHYRLFKNVMESPNEKDARSLDELFKQFYKEIRIVKYMNSMIRIFSI
CCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFDKRVRKNQKRYPLTVDHPEAGDRLSSETGSDAFEEFLDRQDDLSQHVQDYQLYQAIQK
CHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LTDKQKSVLTKVYLHGATMQEIADSLGESRQNISNIHKKGLENIRKQLAAQKKGEK
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKHPIVKHFLSNPQHYRLFKNVMESPNEKDARSLDELFKQFYKEIRIVKYMNSMIRIFSI
CCCHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFDKRVRKNQKRYPLTVDHPEAGDRLSSETGSDAFEEFLDRQDDLSQHVQDYQLYQAIQK
CHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LTDKQKSVLTKVYLHGATMQEIADSLGESRQNISNIHKKGLENIRKQLAAQKKGEK
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377