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The map label for this gene is ysfB

Identifier: 255767659

GI number: 255767659

Start: 2931976

End: 2933082

Strand: Direct

Name: ysfB

Synonym: BSU28670

Alternate gene names: 255767659

Gene position: 2931976-2933082 (Clockwise)

Preceding gene: 16079918

Following gene: 16079920

Centisome position: 69.55

GC content: 45.17

Gene sequence:

>1107_bases
ATGTTTTTACAGCCGTTATTAGCGAAAAAAATTATTGCTGAAGTTAAAAAAATGTACGAACGTGAAGTCATTATTGTAAA
CACGGACGGTCTTATTATGGCAGGCACAAACGATGAGCGTGTCGGACAATTTCATGAGGGAGCGCTTATCTGCGCAAAAG
AAAGACGCAGCGTGATTATTACAAAAGAAGATGAAACAAGGTTAAAAGGAGTGAAAGCAGGCATAAACCTCCCTGTATTT
TTTGACCATGATGTGATTGCCGTCTTCGGGCTGACAGGTGAGCCTGCAGAGATTCAGCCATTCGGAGAACTGCTTCGAAA
AATGACAGAACTGTTCATTAAGGAATCGCGGCACTTAGAGCAATCCCAGTGGCGTGAGAGAATGCTGGAGTCCTTTATGA
TCGATTGGCTGCAATTAAAGGAGTGGTCTCCCAGTTTTCTTGAGAAAGCTCAGCTTCTTGGTGTTGACCTTTCTTCCCGG
CGCCAAATGATTCTTATTCAGGGGTATGAGTGGTCACCTCATGATATTGAACAAATGGCACGCAGCTGGAAATCCTCGTA
CCCTGCGGATTTGTTCATCAGGTGGGGAAATGAACGGATTTTGATTAATCATGAAGTGCCGCAGCATGAACAAAGGGATC
GGCTTTTGCGGAAAATCCTTCACATTTGTTCGTTTGCCAATACCGCAAGCAGCCAATATACAGCAGCTGGCGCCGGAAGG
GCTGTCGCAAGCTCCAGCCTGACAGATTCATACGAGCAAGCGGAAAAAGCGCTGGCTGTCAGCCTTAAGCGAAAAACGCC
CATATTTGAAGAGGATCTGAAGCTTGATATGTGTCTGACGGAGATCAGCCCGGGAACCCGAAACGAATTTCCGCAAAGAG
TATTAGGAAAGGCGCTAGAGCATCAGGAACTTATGAATACGATACGGACTTTCTTTCATCACGATTTGTCTTTGAAACAA
ACCGCTGAAGACATGCATATACACATCAATACATTGCGTTATCGTCTGGCTAAGGCTGAACAGCTGACGGGATTACGTTT
TGACCGTACCGAGGACGTCGTCACGATGTACGTCGCACTCTATTTTTTAGATCAAGATACAAAATAG

Upstream 100 bases:

>100_bases
CGCTTGAAGGCGGATTAAAACCCGCCGAATAAGACATGAAACCGGGTGACAGCGCCCGGTTTTTTTCTTATATAATAAAA
ACATGATGAGGGGGAACGCC

Downstream 100 bases:

>100_bases
AGAGAGTTTCAGTTTCATTTTTTGTATGTTTCTCCATGGAAGGCTTTGCTTTTTTTCTTTTACAATAGATTGAAAGCGTT
TTTTGACAGGGGGATGGGTG

Product: regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MFLQPLLAKKIIAEVKKMYEREVIIVNTDGLIMAGTNDERVGQFHEGALICAKERRSVIITKEDETRLKGVKAGINLPVF
FDHDVIAVFGLTGEPAEIQPFGELLRKMTELFIKESRHLEQSQWRERMLESFMIDWLQLKEWSPSFLEKAQLLGVDLSSR
RQMILIQGYEWSPHDIEQMARSWKSSYPADLFIRWGNERILINHEVPQHEQRDRLLRKILHICSFANTASSQYTAAGAGR
AVASSSLTDSYEQAEKALAVSLKRKTPIFEEDLKLDMCLTEISPGTRNEFPQRVLGKALEHQELMNTIRTFFHHDLSLKQ
TAEDMHIHINTLRYRLAKAEQLTGLRFDRTEDVVTMYVALYFLDQDTK

Sequences:

>Translated_368_residues
MFLQPLLAKKIIAEVKKMYEREVIIVNTDGLIMAGTNDERVGQFHEGALICAKERRSVIITKEDETRLKGVKAGINLPVF
FDHDVIAVFGLTGEPAEIQPFGELLRKMTELFIKESRHLEQSQWRERMLESFMIDWLQLKEWSPSFLEKAQLLGVDLSSR
RQMILIQGYEWSPHDIEQMARSWKSSYPADLFIRWGNERILINHEVPQHEQRDRLLRKILHICSFANTASSQYTAAGAGR
AVASSSLTDSYEQAEKALAVSLKRKTPIFEEDLKLDMCLTEISPGTRNEFPQRVLGKALEHQELMNTIRTFFHHDLSLKQ
TAEDMHIHINTLRYRLAKAEQLTGLRFDRTEDVVTMYVALYFLDQDTK
>Mature_368_residues
MFLQPLLAKKIIAEVKKMYEREVIIVNTDGLIMAGTNDERVGQFHEGALICAKERRSVIITKEDETRLKGVKAGINLPVF
FDHDVIAVFGLTGEPAEIQPFGELLRKMTELFIKESRHLEQSQWRERMLESFMIDWLQLKEWSPSFLEKAQLLGVDLSSR
RQMILIQGYEWSPHDIEQMARSWKSSYPADLFIRWGNERILINHEVPQHEQRDRLLRKILHICSFANTASSQYTAAGAGR
AVASSSLTDSYEQAEKALAVSLKRKTPIFEEDLKLDMCLTEISPGTRNEFPQRVLGKALEHQELMNTIRTFFHHDLSLKQ
TAEDMHIHINTLRYRLAKAEQLTGLRFDRTEDVVTMYVALYFLDQDTK

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family

Homologues:

Organism=Escherichia coli, GI87081694, Length=389, Percent_Identity=24.9357326478149, Blast_Score=131, Evalue=8e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YSFB_BACSU (P94536)

Other databases:

- EMBL:   Z75208
- EMBL:   AL009126
- PIR:   C69984
- RefSeq:   NP_390745.2
- EnsemblBacteria:   EBBACT00000003688
- GeneID:   937437
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28670
- NMPDR:   fig|224308.1.peg.2870
- GenoList:   BSU28670
- GeneTree:   EBGT00050000001504
- HOGENOM:   HBG313695
- PhylomeDB:   P94536
- ProtClustDB:   CLSK873409
- BioCyc:   BSUB:BSU28670-MONOMER
- InterPro:   IPR008599

Pfam domain/function: PF05651 Diacid_rec

EC number: NA

Molecular weight: Translated: 42596; Mature: 42596

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLQPLLAKKIIAEVKKMYEREVIIVNTDGLIMAGTNDERVGQFHEGALICAKERRSVII
CCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCHHCCHHCCCCEEEECCCCEEEE
TKEDETRLKGVKAGINLPVFFDHDVIAVFGLTGEPAEIQPFGELLRKMTELFIKESRHLE
EECCHHHHHHHHCCCCCCEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
QSQWRERMLESFMIDWLQLKEWSPSFLEKAQLLGVDLSSRRQMILIQGYEWSPHDIEQMA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHH
RSWKSSYPADLFIRWGNERILINHEVPQHEQRDRLLRKILHICSFANTASSQYTAAGAGR
HHHHCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCH
AVASSSLTDSYEQAEKALAVSLKRKTPIFEEDLKLDMCLTEISPGTRNEFPQRVLGKALE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHH
HQELMNTIRTFFHHDLSLKQTAEDMHIHINTLRYRLAKAEQLTGLRFDRTEDVVTMYVAL
HHHHHHHHHHHHHCCCCHHHCCCHHEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
YFLDQDTK
HHHCCCCC
>Mature Secondary Structure
MFLQPLLAKKIIAEVKKMYEREVIIVNTDGLIMAGTNDERVGQFHEGALICAKERRSVII
CCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEECCCCHHCCHHCCCCEEEECCCCEEEE
TKEDETRLKGVKAGINLPVFFDHDVIAVFGLTGEPAEIQPFGELLRKMTELFIKESRHLE
EECCHHHHHHHHCCCCCCEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
QSQWRERMLESFMIDWLQLKEWSPSFLEKAQLLGVDLSSRRQMILIQGYEWSPHDIEQMA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHH
RSWKSSYPADLFIRWGNERILINHEVPQHEQRDRLLRKILHICSFANTASSQYTAAGAGR
HHHHCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCH
AVASSSLTDSYEQAEKALAVSLKRKTPIFEEDLKLDMCLTEISPGTRNEFPQRVLGKALE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHH
HQELMNTIRTFFHHDLSLKQTAEDMHIHINTLRYRLAKAEQLTGLRFDRTEDVVTMYVAL
HHHHHHHHHHHHHCCCCHHHCCCHHEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
YFLDQDTK
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377