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The map label for this gene is ydfM

Identifier: 255767145

GI number: 255767145

Start: 595109

End: 596002

Strand: Reverse

Name: ydfM

Synonym: BSU05470

Alternate gene names: 255767145

Gene position: 596002-595109 (Counterclockwise)

Preceding gene: 16077619

Following gene: 16077613

Centisome position: 14.14

GC content: 42.73

Gene sequence:

>894_bases
ATGGCAAGTGAAAGAGAACAAATAAGCAGAAAAGTTGCTTTGATTGCATTGATCGCCAATCTGATCTTAATGGCAGGAAA
GGTCTTTTTTGGGCTGGTAGGCGATAGTGAAGCCGTGTTTGCAGACGGAATACATTCCGCGGCAGATGTCGTTGCTTCGA
TTGCAGTCTTGGCAGTGATCGGAATTTCCAATAAACCGCCCGATCAAGACCATCCTTTTGGTCACGGAAAAGCTGAAGTC
ATTAGTGAGGCGATTGTAGGAATTATCTTAGTGATCGTATCCGTTTATATCCTCATAGAAGCGATTCTGTCCTTTGTTAA
AGGGCCAAGCGTTCCCCAATACAGCGCATTGTTTGCGGCTCTGATTTCGTACGTGGCTAAGGAAATCTTATATCGTTATT
CTATAAAGCAAGGGAAAAAATGGAACAGCAAAGCGATTATAGCGATTGCGTACGATCATAAAGGCGATATCGTTGCCTCT
CTTGCCGCTTTTATCGGCGTCCTGTTGGCTATCATCGGAAACAGCCGTGGATGGTCCTATCTGTTGTACGCCGATGCCAT
TGCCAGTGCAATCGTTGCTTACCTCATTTTTAAGATTTCAATGGAATTAATCAGGCCGTCTGTTGATGTGCTCATGGAAA
AGAGTGTTGATCCCGAGCTGATAGAGGAATATAAAGCTGTTATTTTTCAATGTGATCAGGTAAAACGAATTGATAGAATC
CGCGCGCGAGAACATGGCCACTATAAATTGCTTGATGTCCGTTTATCTTTGGATCATGATTTGACAATTAAGCAGGGACA
CGACATTGCCCGCGAAATTCGAAATGAAATCAAAAGACAGTTTTCAGATGTAGAAGAAGTGCTCATCCATGTAAATCCTT
ATTTCGAAGAATGA

Upstream 100 bases:

>100_bases
ATTGAATTGGTATGATAAACAAAGTGATTACACAGGAAAGGATACGGAGAGCGTATATAGAGCACTCCTATTTTTTTGTG
CAGTTTTATAGGAGGAAAAA

Downstream 100 bases:

>100_bases
AAAGCTCCTTTTTAGAAGGAGTTTTTTCTTTATGCTGCAAACTTTACCTTTAGTACTCGCCGTACTATATAATGTGTGTA
TATCAATCATAGGACAGAAA

Product: divalent cation efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MASEREQISRKVALIALIANLILMAGKVFFGLVGDSEAVFADGIHSAADVVASIAVLAVIGISNKPPDQDHPFGHGKAEV
ISEAIVGIILVIVSVYILIEAILSFVKGPSVPQYSALFAALISYVAKEILYRYSIKQGKKWNSKAIIAIAYDHKGDIVAS
LAAFIGVLLAIIGNSRGWSYLLYADAIASAIVAYLIFKISMELIRPSVDVLMEKSVDPELIEEYKAVIFQCDQVKRIDRI
RAREHGHYKLLDVRLSLDHDLTIKQGHDIAREIRNEIKRQFSDVEEVLIHVNPYFEE

Sequences:

>Translated_297_residues
MASEREQISRKVALIALIANLILMAGKVFFGLVGDSEAVFADGIHSAADVVASIAVLAVIGISNKPPDQDHPFGHGKAEV
ISEAIVGIILVIVSVYILIEAILSFVKGPSVPQYSALFAALISYVAKEILYRYSIKQGKKWNSKAIIAIAYDHKGDIVAS
LAAFIGVLLAIIGNSRGWSYLLYADAIASAIVAYLIFKISMELIRPSVDVLMEKSVDPELIEEYKAVIFQCDQVKRIDRI
RAREHGHYKLLDVRLSLDHDLTIKQGHDIAREIRNEIKRQFSDVEEVLIHVNPYFEE
>Mature_296_residues
ASEREQISRKVALIALIANLILMAGKVFFGLVGDSEAVFADGIHSAADVVASIAVLAVIGISNKPPDQDHPFGHGKAEVI
SEAIVGIILVIVSVYILIEAILSFVKGPSVPQYSALFAALISYVAKEILYRYSIKQGKKWNSKAIIAIAYDHKGDIVASL
AAFIGVLLAIIGNSRGWSYLLYADAIASAIVAYLIFKISMELIRPSVDVLMEKSVDPELIEEYKAVIFQCDQVKRIDRIR
AREHGHYKLLDVRLSLDHDLTIKQGHDIAREIRNEIKRQFSDVEEVLIHVNPYFEE

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family

Homologues:

Organism=Escherichia coli, GI1790349, Length=287, Percent_Identity=22.2996515679443, Blast_Score=74, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI115533508, Length=300, Percent_Identity=20.3333333333333, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533506, Length=300, Percent_Identity=20.3333333333333, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI72000060, Length=293, Percent_Identity=21.5017064846416, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI72000062, Length=293, Percent_Identity=21.5017064846416, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6323831, Length=246, Percent_Identity=27.6422764227642, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6325032, Length=234, Percent_Identity=23.0769230769231, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDFM_BACSU (C0SP78)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   C69781
- RefSeq:   NP_388428.2
- ProteinModelPortal:   C0SP78
- SMR:   C0SP78
- EnsemblBacteria:   EBBACT00000003775
- GeneID:   939900
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05470
- GenoList:   BSU05470
- GeneTree:   EBGT00050000001463
- HOGENOM:   HBG317426
- ProtClustDB:   CLSK886774
- BioCyc:   BSUB:BSU05470-MONOMER
- InterPro:   IPR002524
- PANTHER:   PTHR11562
- TIGRFAMs:   TIGR01297

Pfam domain/function: PF01545 Cation_efflux

EC number: NA

Molecular weight: Translated: 32855; Mature: 32724

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc7ab0f4)-; HASH(0xca01980)-; HASH(0xd12a154)-; HASH(0xc009aa8)-; HASH(0xd4adffc)-; HASH(0xca019b0)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASEREQISRKVALIALIANLILMAGKVFFGLVGDSEAVFADGIHSAADVVASIAVLAVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
GISNKPPDQDHPFGHGKAEVISEAIVGIILVIVSVYILIEAILSFVKGPSVPQYSALFAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LISYVAKEILYRYSIKQGKKWNSKAIIAIAYDHKGDIVASLAAFIGVLLAIIGNSRGWSY
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEE
LLYADAIASAIVAYLIFKISMELIRPSVDVLMEKSVDPELIEEYKAVIFQCDQVKRIDRI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAREHGHYKLLDVRLSLDHDLTIKQGHDIAREIRNEIKRQFSDVEEVLIHVNPYFEE
HHHCCCCEEEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure 
ASEREQISRKVALIALIANLILMAGKVFFGLVGDSEAVFADGIHSAADVVASIAVLAVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
GISNKPPDQDHPFGHGKAEVISEAIVGIILVIVSVYILIEAILSFVKGPSVPQYSALFAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LISYVAKEILYRYSIKQGKKWNSKAIIAIAYDHKGDIVASLAAFIGVLLAIIGNSRGWSY
HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEE
LLYADAIASAIVAYLIFKISMELIRPSVDVLMEKSVDPELIEEYKAVIFQCDQVKRIDRI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
RAREHGHYKLLDVRLSLDHDLTIKQGHDIAREIRNEIKRQFSDVEEVLIHVNPYFEE
HHHCCCCEEEEEEEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377